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The map label for this gene is abaB [H]

Identifier: 78221751

GI number: 78221751

Start: 569585

End: 570541

Strand: Reverse

Name: abaB [H]

Synonym: Gmet_0530

Alternate gene names: 78221751

Gene position: 570541-569585 (Counterclockwise)

Preceding gene: 78221761

Following gene: 78221750

Centisome position: 14.27

GC content: 56.53

Gene sequence:

>957_bases
ATGGACATAACGCTCTTCAAGACACTGCTCAAGGTTGCGGCCATCGGCAATATTTCCAAGGCCGCCGCAGTGCTCTGCGT
CACCCAGTCCGCGGTTTCGCGCCGGCTCAAGCAGTTGGAGGATCACATCGGCAAGCCACTGCTGATACGCTCGGGCAACG
CCGTCAGGCCCACCGAGGCCGGTCAGTTTGTGCTCGCCAAGGCCCAGCAGATCGTCGATCTGGAAAGCCAAATCGTTGAC
AAACTCAATGTCAATGAGCCGAAGCAGCGCATTTCCCTCTGCTGTACCCCTGCATTCGGCATCGGACGACTCCCTTCCAT
CGTTTCCGCGTTCATGGCCGACAACGCCGAATCCGCTGACCTGAATTTCGTCTTTAACATGCCTGAGCAGGCTCTCGAAG
GAATCGAAAACGGGCGCTTCGACTTGGCCATTATCGAACACTGCGATGACCTGAACATGGCCGGCCACAGAGGCTACCCG
CTCCCCGACGACGAGATGATTTTTTTAAGCGCTCCGTCCCTCGGGATCGACTCACCTGCCCCATCCATCGAGCAACTGTT
CGACAAGCGCCTCTACCTGAAGAACGAGCAGGGTTGCGCCAGGCGCTTCCTGGACAAAAACCTGGCATTGACCGGCCATT
CGATCACCGAGTTCGCCAACATCATCTATTTCGACGACTTGCAGTTCATCATGCGCGAAGTGCTTGCCGGCAAGGGAATC
AGCTTTGTCCCCATCGGTCTAGTGGTAGACGAACTCTGTCGCCATACCCTCATGGCCCACAGGATTGCCGATTTCGACCA
TTTCTACCCCAGAACCATCATCCTCGGTCGGCGGGCCCCATCCCCCCTTCTCCTGTCGTTCATCAACACCATTTACATTG
CCTTTGGCATGCCGTGCCCATCAATCTTTCACACAGAAGCTCCATTCCCGCCTGAAGGGTTTCCCGAATCCCTCTAG

Upstream 100 bases:

>100_bases
TTCTAACTTATTGTTTCGACCCAATTTTACTGCTATAGTTTCTCTGATTAATTTTCATGACAGCCATGCGTTTCAGGCAT
AACAAGCACCGGGGGGGGCA

Downstream 100 bases:

>100_bases
CTAGATAAAATTTTTTTCAGGAAAATTCTAAAGTCATCTTCTGCTTCTGCCGATAAACAGGATGAAGAGAGTTCTGTACC
GCGGCCGGCCTTACGGGCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MDITLFKTLLKVAAIGNISKAAAVLCVTQSAVSRRLKQLEDHIGKPLLIRSGNAVRPTEAGQFVLAKAQQIVDLESQIVD
KLNVNEPKQRISLCCTPAFGIGRLPSIVSAFMADNAESADLNFVFNMPEQALEGIENGRFDLAIIEHCDDLNMAGHRGYP
LPDDEMIFLSAPSLGIDSPAPSIEQLFDKRLYLKNEQGCARRFLDKNLALTGHSITEFANIIYFDDLQFIMREVLAGKGI
SFVPIGLVVDELCRHTLMAHRIADFDHFYPRTIILGRRAPSPLLLSFINTIYIAFGMPCPSIFHTEAPFPPEGFPESL

Sequences:

>Translated_318_residues
MDITLFKTLLKVAAIGNISKAAAVLCVTQSAVSRRLKQLEDHIGKPLLIRSGNAVRPTEAGQFVLAKAQQIVDLESQIVD
KLNVNEPKQRISLCCTPAFGIGRLPSIVSAFMADNAESADLNFVFNMPEQALEGIENGRFDLAIIEHCDDLNMAGHRGYP
LPDDEMIFLSAPSLGIDSPAPSIEQLFDKRLYLKNEQGCARRFLDKNLALTGHSITEFANIIYFDDLQFIMREVLAGKGI
SFVPIGLVVDELCRHTLMAHRIADFDHFYPRTIILGRRAPSPLLLSFINTIYIAFGMPCPSIFHTEAPFPPEGFPESL
>Mature_318_residues
MDITLFKTLLKVAAIGNISKAAAVLCVTQSAVSRRLKQLEDHIGKPLLIRSGNAVRPTEAGQFVLAKAQQIVDLESQIVD
KLNVNEPKQRISLCCTPAFGIGRLPSIVSAFMADNAESADLNFVFNMPEQALEGIENGRFDLAIIEHCDDLNMAGHRGYP
LPDDEMIFLSAPSLGIDSPAPSIEQLFDKRLYLKNEQGCARRFLDKNLALTGHSITEFANIIYFDDLQFIMREVLAGKGI
SFVPIGLVVDELCRHTLMAHRIADFDHFYPRTIILGRRAPSPLLLSFINTIYIAFGMPCPSIFHTEAPFPPEGFPESL

Specific function: Putative regulator of secondary metabolism [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787806, Length=291, Percent_Identity=23.0240549828179, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35184; Mature: 35184

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDITLFKTLLKVAAIGNISKAAAVLCVTQSAVSRRLKQLEDHIGKPLLIRSGNAVRPTEA
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
GQFVLAKAQQIVDLESQIVDKLNVNEPKQRISLCCTPAFGIGRLPSIVSAFMADNAESAD
CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
LNFVFNMPEQALEGIENGRFDLAIIEHCDDLNMAGHRGYPLPDDEMIFLSAPSLGIDSPA
EEEEECCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
PSIEQLFDKRLYLKNEQGCARRFLDKNLALTGHSITEFANIIYFDDLQFIMREVLAGKGI
CHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
SFVPIGLVVDELCRHTLMAHRIADFDHFYPRTIILGRRAPSPLLLSFINTIYIAFGMPCP
CEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC
SIFHTEAPFPPEGFPESL
HHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDITLFKTLLKVAAIGNISKAAAVLCVTQSAVSRRLKQLEDHIGKPLLIRSGNAVRPTEA
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
GQFVLAKAQQIVDLESQIVDKLNVNEPKQRISLCCTPAFGIGRLPSIVSAFMADNAESAD
CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
LNFVFNMPEQALEGIENGRFDLAIIEHCDDLNMAGHRGYPLPDDEMIFLSAPSLGIDSPA
EEEEECCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
PSIEQLFDKRLYLKNEQGCARRFLDKNLALTGHSITEFANIIYFDDLQFIMREVLAGKGI
CHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
SFVPIGLVVDELCRHTLMAHRIADFDHFYPRTIILGRRAPSPLLLSFINTIYIAFGMPCP
CEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC
SIFHTEAPFPPEGFPESL
HHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9037760 [H]