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The map label for this gene is arnC [H]

Identifier: 78221465

GI number: 78221465

Start: 271596

End: 272357

Strand: Reverse

Name: arnC [H]

Synonym: Gmet_0242

Alternate gene names: 78221465

Gene position: 272357-271596 (Counterclockwise)

Preceding gene: 78221466

Following gene: 78221464

Centisome position: 6.81

GC content: 58.92

Gene sequence:

>762_bases
TTGTCTGGTGGCCCCGTGAAAACTCCATTCCTGTCATTCATCATACCTGCCTACAACGAAGAGCAACGCCTCCCATCCTA
CCTGGAACGGGTAATCGGGTTTTTCGCGGGGCAGTCCTATTCATTCGAGATAGTTGTCGTGGATGACGGCAGCTCCGACG
GGACGGCGGCGCTGGTGAAAGCGCTCATGGCGCAGCATTCCTGCCTGCGGCTGGAAGCGCTCGACCGGAACAGGGGGAAG
GGGTTTGCGGTAAAAACCGGGATGAGCGCCGCGAAGGGCCAACTCCGCGTTTTTGCCGATGCCGATGGGGCAACGCCCGT
CGAAGAGATCCGACGGCTGCTCGATGCCCGTGAGCAAGGGGCCGACATTGCCATCGGCTCACGGGCCATGAGGTCCGACG
AGTGCATCGTACAGGGAAGGGTACACCGCAAAATCATGGGAACGGTTTTCAACGGGCTCATACGAGCCCTTGCAGTACGG
GGCATTCACGATTCCCAGTGCGGCTTCAAGCTCTTCACGGCCTCTGCCGCCGAAGACATTTTCCCGCGGCAAAGGATTAC
CGGTTTCGGGTTTGACGTGGAACTCCTCTTCTTGGCCCGGCGTTTGGGGTATGTGGTCGTTGAGGTGCCGGTAAACTGGT
CTGATGTGGAGGGGACAAAGGTTCGCCTGGTACGGGATTCCTTCCGGATGCTCGGCGAAGTGCTGCGGATACGGTTCACC
AACCTTACCGGAGGCTATGGAGACATCCCCGGCAAAACATAA

Upstream 100 bases:

>100_bases
GGCAATGCCCCGCCTCTTCCCGGCATTGAAGCGGTCTACATCGGCCAGGAGCCGGGCGGACTCCCCTATATTGTCTACCG
GTTTGTCCGGCAGTGACATC

Downstream 100 bases:

>100_bases
CTAATCATTTCATCATCGTATCCTCCTCCCCCTATATCCCGCGAACGCAGCTTGACTTCACCCGGACGGCCGGTATACTT
TCCATTACAAATCAACGTGA

Product: hypothetical protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MSGGPVKTPFLSFIIPAYNEEQRLPSYLERVIGFFAGQSYSFEIVVVDDGSSDGTAALVKALMAQHSCLRLEALDRNRGK
GFAVKTGMSAAKGQLRVFADADGATPVEEIRRLLDAREQGADIAIGSRAMRSDECIVQGRVHRKIMGTVFNGLIRALAVR
GIHDSQCGFKLFTASAAEDIFPRQRITGFGFDVELLFLARRLGYVVVEVPVNWSDVEGTKVRLVRDSFRMLGEVLRIRFT
NLTGGYGDIPGKT

Sequences:

>Translated_253_residues
MSGGPVKTPFLSFIIPAYNEEQRLPSYLERVIGFFAGQSYSFEIVVVDDGSSDGTAALVKALMAQHSCLRLEALDRNRGK
GFAVKTGMSAAKGQLRVFADADGATPVEEIRRLLDAREQGADIAIGSRAMRSDECIVQGRVHRKIMGTVFNGLIRALAVR
GIHDSQCGFKLFTASAAEDIFPRQRITGFGFDVELLFLARRLGYVVVEVPVNWSDVEGTKVRLVRDSFRMLGEVLRIRFT
NLTGGYGDIPGKT
>Mature_252_residues
SGGPVKTPFLSFIIPAYNEEQRLPSYLERVIGFFAGQSYSFEIVVVDDGSSDGTAALVKALMAQHSCLRLEALDRNRGKG
FAVKTGMSAAKGQLRVFADADGATPVEEIRRLLDAREQGADIAIGSRAMRSDECIVQGRVHRKIMGTVFNGLIRALAVRG
IHDSQCGFKLFTASAAEDIFPRQRITGFGFDVELLFLARRLGYVVVEVPVNWSDVEGTKVRLVRDSFRMLGEVLRIRFTN
LTGGYGDIPGKT

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI7019323, Length=252, Percent_Identity=34.9206349206349, Blast_Score=160, Evalue=1e-39,
Organism=Homo sapiens, GI215276969, Length=246, Percent_Identity=33.739837398374, Blast_Score=135, Evalue=3e-32,
Organism=Homo sapiens, GI4503363, Length=207, Percent_Identity=28.0193236714976, Blast_Score=86, Evalue=3e-17,
Organism=Escherichia coli, GI1788588, Length=214, Percent_Identity=30.3738317757009, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788692, Length=170, Percent_Identity=30, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787259, Length=97, Percent_Identity=39.1752577319588, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI25146207, Length=256, Percent_Identity=37.5, Blast_Score=154, Evalue=4e-38,
Organism=Caenorhabditis elegans, GI71999402, Length=212, Percent_Identity=28.3018867924528, Blast_Score=82, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6325029, Length=257, Percent_Identity=36.5758754863813, Blast_Score=155, Evalue=4e-39,
Organism=Saccharomyces cerevisiae, GI6325441, Length=193, Percent_Identity=29.5336787564767, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24582769, Length=249, Percent_Identity=38.5542168674699, Blast_Score=166, Evalue=1e-41,
Organism=Drosophila melanogaster, GI24585265, Length=214, Percent_Identity=26.6355140186916, Blast_Score=78, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 27752; Mature: 27621

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGGPVKTPFLSFIIPAYNEEQRLPSYLERVIGFFAGQSYSFEIVVVDDGSSDGTAALVK
CCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHH
ALMAQHSCLRLEALDRNRGKGFAVKTGMSAAKGQLRVFADADGATPVEEIRRLLDAREQG
HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCC
ADIAIGSRAMRSDECIVQGRVHRKIMGTVFNGLIRALAVRGIHDSQCGFKLFTASAAEDI
CCEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHH
FPRQRITGFGFDVELLFLARRLGYVVVEVPVNWSDVEGTKVRLVRDSFRMLGEVLRIRFT
CCHHHHCCCCCHHHHHHHHHHHCEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHEEE
NLTGGYGDIPGKT
CCCCCCCCCCCCC
>Mature Secondary Structure 
SGGPVKTPFLSFIIPAYNEEQRLPSYLERVIGFFAGQSYSFEIVVVDDGSSDGTAALVK
CCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHH
ALMAQHSCLRLEALDRNRGKGFAVKTGMSAAKGQLRVFADADGATPVEEIRRLLDAREQG
HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCC
ADIAIGSRAMRSDECIVQGRVHRKIMGTVFNGLIRALAVRGIHDSQCGFKLFTASAAEDI
CCEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHH
FPRQRITGFGFDVELLFLARRLGYVVVEVPVNWSDVEGTKVRLVRDSFRMLGEVLRIRFT
CCHHHHCCCCCHHHHHHHHHHHCEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHEEE
NLTGGYGDIPGKT
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA