| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
Click here to switch to the map view.
The map label for this gene is yfaO [C]
Identifier: 78221431
GI number: 78221431
Start: 240683
End: 241126
Strand: Direct
Name: yfaO [C]
Synonym: Gmet_0207
Alternate gene names: 78221431
Gene position: 240683-241126 (Clockwise)
Preceding gene: 78221430
Following gene: 78221432
Centisome position: 6.02
GC content: 57.43
Gene sequence:
>444_bases ATGACCAAGAAGACTTTCAAGAAAGACCACATAGTCACCTCTGTCGTGGCGGTCATCGTGGACGATGACGGGCAGGTGCT CCTCACCAAGCGGAACGTGAGCCCCTTCAAGGGCGAATGGGTCATGCCGGGGGGGAAGATCGATCTGGGCGAGCCGATTA TCAAGGCCCTCCAGCGGGAGGTTATGGAAGAGGTGGGGCTTCAGGTGGAGGTGGAGGACCTGGTCGACGTTTTCGAGCAC GTGACGCCGGGTGAGGACAACTACCACTTCATCATCCTCTACTATCTCTGCCACCCCCTCTACTGTGACATCAACCACAA TCTGGACGAGGTGGAGGAGGCCCGCTGGGTTCCCCGCGGGGAATTGATAAACTACAAGATGCCCCAGGGGGCCAGATTCA TCCTTGGGAAAATTTTCCCGGAACTCTGCAGCTGCGAGACGTGA
Upstream 100 bases:
>100_bases AGGGCGCTCATGCAGGGGAAAAAGTAGGAAAACGCGCCTTTTCGCAATCTCTGAATCATGACATCAGGGACACGGTTCGC CGTGTCCCTTCGTCTATCCC
Downstream 100 bases:
>100_bases CGAGGTCTCCATGGTCCAGATCATCGACAAAAAGGTGAATCTTGAATATGCGCTGGGGCACCACCTCCACTGCATGATCG CCCAGGTGCCGAACCGGATC
Product: NUDIX hydrolase
Products: NA
Alternate protein names: ADP-Ribose Pyrophosphatase; Mutator MutT Protein; MutT-Like Protein; MutT/Nudix Family Protein; NUDIX Domain-Containing; NUDIX Family Hydrolase; Hydrolase NUDIX Family; MutT Family Protein
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MTKKTFKKDHIVTSVVAVIVDDDGQVLLTKRNVSPFKGEWVMPGGKIDLGEPIIKALQREVMEEVGLQVEVEDLVDVFEH VTPGEDNYHFIILYYLCHPLYCDINHNLDEVEEARWVPRGELINYKMPQGARFILGKIFPELCSCET
Sequences:
>Translated_147_residues MTKKTFKKDHIVTSVVAVIVDDDGQVLLTKRNVSPFKGEWVMPGGKIDLGEPIIKALQREVMEEVGLQVEVEDLVDVFEH VTPGEDNYHFIILYYLCHPLYCDINHNLDEVEEARWVPRGELINYKMPQGARFILGKIFPELCSCET >Mature_146_residues TKKTFKKDHIVTSVVAVIVDDDGQVLLTKRNVSPFKGEWVMPGGKIDLGEPIIKALQREVMEEVGLQVEVEDLVDVFEHV TPGEDNYHFIILYYLCHPLYCDINHNLDEVEEARWVPRGELINYKMPQGARFILGKIFPELCSCET
Specific function: Unknown
COG id: COG1051
COG function: function code F; ADP-ribose pyrophosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.6.1.-
Molecular weight: Translated: 16847; Mature: 16715
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: PS00893 NUDIX
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKKTFKKDHIVTSVVAVIVDDDGQVLLTKRNVSPFKGEWVMPGGKIDLGEPIIKALQRE CCCCHHHHHHHHHHHEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHHH VMEEVGLQVEVEDLVDVFEHVTPGEDNYHFIILYYLCHPLYCDINHNLDEVEEARWVPRG HHHHHCCEEEHHHHHHHHHHCCCCCCCEEEEEHHHHHCCEEECCCCCHHHHHHHHCCCCC ELINYKMPQGARFILGKIFPELCSCET CEEEEECCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure TKKTFKKDHIVTSVVAVIVDDDGQVLLTKRNVSPFKGEWVMPGGKIDLGEPIIKALQRE CCCHHHHHHHHHHHEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHHH VMEEVGLQVEVEDLVDVFEHVTPGEDNYHFIILYYLCHPLYCDINHNLDEVEEARWVPRG HHHHHCCEEEHHHHHHHHHHCCCCCCCEEEEEHHHHHCCEEECCCCCHHHHHHHHCCCCC ELINYKMPQGARFILGKIFPELCSCET CEEEEECCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA