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The map label for this gene is rnpA

Identifier: 78189985

GI number: 78189985

Start: 2571199

End: 2571456

Strand: Reverse

Name: rnpA

Synonym: Cag_2032

Alternate gene names: 78189985

Gene position: 2571456-2571199 (Counterclockwise)

Preceding gene: 78189986

Following gene: 78189984

Centisome position: 99.98

GC content: 43.41

Gene sequence:

>258_bases
ATGTTTGTAGTGAGCAAAAAAAATGTTCGTCATGCAGTAAAGCGTAATCGTATTAAACGCTTAATGCGTGAGGCATACCG
ACTTGAAAAAGTGCAACTTGTTGATGCTGTAAGCCAGCAAGAAATGGTTCCTATAGCAGTAGCAATTGCCTACACGGGTA
AAGCTTCACAAATTCCACCTCTTGCGTTGTTTCGCCGAGAGTTACGAGAGCTTTTTACTGCGCTGAGTGCATCGAATGTG
GTGGGTGAAGTGAGCTAA

Upstream 100 bases:

>100_bases
GCAGCTTTTTACCAAAGGTAAAAGTTGTAAAGCCTCTTTTTTAAGAGTTATTTATACCCGCTTTGCTTCGCAAGAGGCGT
TGCAAAGTTGGGTTCTCGTT

Downstream 100 bases:

>100_bases
AAAACGGGTAACTCTTTTAATTCCTCATGAAAGTCAATCAGTTTTTACTTGCTGTTGTTTTGTGCTTGTAATGCGACACT
CTTTTGCAATGTACTTGAAG

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5 [H]

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MFVVSKKNVRHAVKRNRIKRLMREAYRLEKVQLVDAVSQQEMVPIAVAIAYTGKASQIPPLALFRRELRELFTALSASNV
VGEVS

Sequences:

>Translated_85_residues
MFVVSKKNVRHAVKRNRIKRLMREAYRLEKVQLVDAVSQQEMVPIAVAIAYTGKASQIPPLALFRRELRELFTALSASNV
VGEVS
>Mature_85_residues
MFVVSKKNVRHAVKRNRIKRLMREAYRLEKVQLVDAVSQQEMVPIAVAIAYTGKASQIPPLALFRRELRELFTALSASNV
VGEVS

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- ProDom:   PD003629 [H]

Pfam domain/function: PF00825 Ribonuclease_P [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 9625; Mature: 9625

Theoretical pI: Translated: 11.31; Mature: 11.31

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVVSKKNVRHAVKRNRIKRLMREAYRLEKVQLVDAVSQQEMVPIAVAIAYTGKASQIPP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEECCCCCCCCH
LALFRRELRELFTALSASNVVGEVS
HHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFVVSKKNVRHAVKRNRIKRLMREAYRLEKVQLVDAVSQQEMVPIAVAIAYTGKASQIPP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEECCCCCCCCH
LALFRRELRELFTALSASNVVGEVS
HHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA