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The map label for this gene is rlpA [C]

Identifier: 78189641

GI number: 78189641

Start: 2185737

End: 2186189

Strand: Reverse

Name: rlpA [C]

Synonym: Cag_1684

Alternate gene names: 78189641

Gene position: 2186189-2185737 (Counterclockwise)

Preceding gene: 78189642

Following gene: 78189639

Centisome position: 85.0

GC content: 43.05

Gene sequence:

>453_bases
ATGAAACATGAAAAACACTTTTTCAGACTCTCGTATTGTGTGATTGCAACGGCGTTGGTTGCATTTTCCAGCTCTGTTTT
TTCACTTCCTTCTGAAGCCGCAACAAGGCGCTCGGCTGCTACATACAGAAGCAAAGCGCTCAGTGAAGGCACAGCTTCGT
TTTACTCCACTCAATTTCATGGGCGTAAAACAGCTAACGGTGAAACCTTTAACATGAATCAGCTCACGGCTGCTCACCCT
TCATTACCTTTTGGCACGTTGGTTAAGGTTACCAATATGGATAATGGCAAAAATGTGGTGGTGCGTATTAATGATCGTGG
TCCGTATGTGAAAGGACGAATTATTGATTTATCAAAAAGTGCCGCAATAAAAATTGGCATCTTAAAAGAGGGTGTTGCGC
AAGTTAAGGTTGAGCCCGTCAAACCAACCATCAATACCCAAGTTGCAGGTTAA

Upstream 100 bases:

>100_bases
GAACCGATTGAGATAACTGAATAGACTGTTAATTTTTATTCATTTCTACCTGTTCCTTACCCGTTAACAGTCTGGGAACA
GAGGGCTAAATCCCAGTCGT

Downstream 100 bases:

>100_bases
CTTTTGTACGCTTCGTAATAATGCAAAAGCGCCATCTGAAAACTATTCAGATGGCGCTTTTTGTTTGTAGTGCCTCGCCT
TAAACAACGATTATGGTAGA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MKHEKHFFRLSYCVIATALVAFSSSVFSLPSEAATRRSAATYRSKALSEGTASFYSTQFHGRKTANGETFNMNQLTAAHP
SLPFGTLVKVTNMDNGKNVVVRINDRGPYVKGRIIDLSKSAAIKIGILKEGVAQVKVEPVKPTINTQVAG

Sequences:

>Translated_150_residues
MKHEKHFFRLSYCVIATALVAFSSSVFSLPSEAATRRSAATYRSKALSEGTASFYSTQFHGRKTANGETFNMNQLTAAHP
SLPFGTLVKVTNMDNGKNVVVRINDRGPYVKGRIIDLSKSAAIKIGILKEGVAQVKVEPVKPTINTQVAG
>Mature_150_residues
MKHEKHFFRLSYCVIATALVAFSSSVFSLPSEAATRRSAATYRSKALSEGTASFYSTQFHGRKTANGETFNMNQLTAAHP
SLPFGTLVKVTNMDNGKNVVVRINDRGPYVKGRIIDLSKSAAIKIGILKEGVAQVKVEPVKPTINTQVAG

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=91, Percent_Identity=42.8571428571429, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 16261; Mature: 16261

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHEKHFFRLSYCVIATALVAFSSSVFSLPSEAATRRSAATYRSKALSEGTASFYSTQFH
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHEEECC
GRKTANGETFNMNQLTAAHPSLPFGTLVKVTNMDNGKNVVVRINDRGPYVKGRIIDLSKS
CCCCCCCCEEECCCEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCC
AAIKIGILKEGVAQVKVEPVKPTINTQVAG
CEEEEEEECCCCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MKHEKHFFRLSYCVIATALVAFSSSVFSLPSEAATRRSAATYRSKALSEGTASFYSTQFH
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHEEECC
GRKTANGETFNMNQLTAAHPSLPFGTLVKVTNMDNGKNVVVRINDRGPYVKGRIIDLSKS
CCCCCCCCEEECCCEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCC
AAIKIGILKEGVAQVKVEPVKPTINTQVAG
CEEEEEEECCCCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]