Click here to switch to the map view.

The map label for this gene is higB-1 [H]

Identifier: 78189449

GI number: 78189449

Start: 1959092

End: 1959373

Strand: Reverse

Name: higB-1 [H]

Synonym: Cag_1488

Alternate gene names: 78189449

Gene position: 1959373-1959092 (Counterclockwise)

Preceding gene: 162319771

Following gene: 78189448

Centisome position: 76.18

GC content: 37.59

Gene sequence:

>282_bases
ATGATTGTTTCGTTTGGCTCCAAAGAATGCGAACGGATATGGGACGGGTTTCAGGTAAAAAGTTTACCGTGTGAAATTCA
GGATATTGCTCGACGTAAGTTGCGAATGATAAACAATGCGTTAACTTTAGTGGACTTACGAATTCCACCGGCAAATCGTC
TCGAAAAACTTTCTGGTGACTTGAAAGATTTTTATAGTATTCGGATTAATAAGCAATGGCGCATTATTTTTCGATGGCAT
AATGGCGAAGCATCAATGGTTGAAATTATAGATTATCACTAA

Upstream 100 bases:

>100_bases
GGCTGGGTGTGTATAATGATTTATTGTGTTTTTTAAGTATCAAATATGTTTTTATATTGAGTTATAAATTTCTCATTTTG
TGAATAGTTACGCTCTTACT

Downstream 100 bases:

>100_bases
CATGGCAACACTACGAAATATTCATCCGGGAGAAATATTGATGGAAGAGTTTTTGCTACCATTTGGTATTTCGCTTCGTA
AACTTTCATACGATATTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MIVSFGSKECERIWDGFQVKSLPCEIQDIARRKLRMINNALTLVDLRIPPANRLEKLSGDLKDFYSIRINKQWRIIFRWH
NGEASMVEIIDYH

Sequences:

>Translated_93_residues
MIVSFGSKECERIWDGFQVKSLPCEIQDIARRKLRMINNALTLVDLRIPPANRLEKLSGDLKDFYSIRINKQWRIIFRWH
NGEASMVEIIDYH
>Mature_93_residues
MIVSFGSKECERIWDGFQVKSLPCEIQDIARRKLRMINNALTLVDLRIPPANRLEKLSGDLKDFYSIRINKQWRIIFRWH
NGEASMVEIIDYH

Specific function: Inhibits translation by cleavage of mRNA [H]

COG id: COG3549

COG function: function code R; Plasmid maintenance system killer protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007711 [H]

Pfam domain/function: PF05015 Plasmid_killer [H]

EC number: NA

Molecular weight: Translated: 11048; Mature: 11048

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVSFGSKECERIWDGFQVKSLPCEIQDIARRKLRMINNALTLVDLRIPPANRLEKLSGD
CEECCCCHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHCCC
LKDFYSIRINKQWRIIFRWHNGEASMVEIIDYH
HHHEEEEEECCCEEEEEEEECCCCEEEEEEECC
>Mature Secondary Structure
MIVSFGSKECERIWDGFQVKSLPCEIQDIARRKLRMINNALTLVDLRIPPANRLEKLSGD
CEECCCCHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHCCC
LKDFYSIRINKQWRIIFRWHNGEASMVEIIDYH
HHHEEEEEECCCEEEEEEEECCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]