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The map label for this gene is yibD [C]

Identifier: 78189439

GI number: 78189439

Start: 1944524

End: 1945501

Strand: Reverse

Name: yibD [C]

Synonym: Cag_1478

Alternate gene names: 78189439

Gene position: 1945501-1944524 (Counterclockwise)

Preceding gene: 78189440

Following gene: 78189438

Centisome position: 75.64

GC content: 29.55

Gene sequence:

>978_bases
ATGAGAGAGTATTTAATATCAGTTATTATTGCAGTCTATAACCCAAATGCTATTTTTCTTCAAAAAGCTATTCAGTCAGT
ATTAAATCAAAGTTTTCCTGTATTAGAATTAATATTGGTTAATGATGGTGGAAATGAAGAATTTCGTAATTTATTGCCTA
CAGATTCTCGAATTAAAGTATTTCGAAAAGTAAATGAAGGTGTTGCCCTTGCTCGTAATTATGCTATTCAACAATCTCAA
GGTGAATATATAGCCTTTCTTGATCAAGATGATTATTGGTTTCCACATAAACTTGAGAAACAAATTTCAATGATTCCATC
TGATCAACCACAATGTTTTGTGGTTTCTCCTATTCAAATTATTGATTCAGTTGGAAGTGTTGTTGATAAAAATAACTTAG
CAGCAACAAGTCTGTATAAAAATAACTTATCTCTTGTAAACCCTTTTTTAGGGTTATGTTATGGTAATTATATTTATTCA
TCCACGCCATTAATTCATAAAAAAGTTTTCGAAATTGTTGGGTTATTTGATGTTGCTGCACAGCCTCATGATGATTGGGA
TATGTATTTAAGAATACTGTATGCAGGTGTTCCTTTTTTCAGATATACGGATTCTGCATTGTCAGTTTGGCGAATACATG
ATTCTAATGAGTCGCATAAAATTAAGGCAATGTTATTATCAAAATGTTATGTTGAAAAGAAATTGTTAGAATTGAATTTA
GTTGCTCCAGTTAGAGAGGTTGTTACGATTAATTTATTGTTTGATAATGTTGAATTAGCACATTTGTTTTATAAAGAAAA
TAATACTCCTGAATTTCGTTTTCTTATGAAAAGATATTTACCATCTCTTATTCGTGTTTTTTTTGTTCGGTTCAATAAAA
CATTTGAACTTGATAAAATTTTGTTTCGTCGTATTCGTAAGATTATCCTTAAGTCATTTCGGCGTTACATTGTTTCTTTT
TTGAGATGTAATGGATAG

Upstream 100 bases:

>100_bases
GATGGACCTTATATGCTTTTATATAATAATCTATGGATATCTATTTTGTTGATTGATAATTTTTGTTTGTAATAGATGGA
ATGCTAAAGGATAAAAAAAT

Downstream 100 bases:

>100_bases
TTTATGCTCAAAATTCTTTGCCTCCATATTGCTCACAAACAAGCAAGCTACCGTTACCGAGTAGAGCAATTTTTACCTTA
TTGGAAGCAATATGGAATTG

Product: glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MREYLISVIIAVYNPNAIFLQKAIQSVLNQSFPVLELILVNDGGNEEFRNLLPTDSRIKVFRKVNEGVALARNYAIQQSQ
GEYIAFLDQDDYWFPHKLEKQISMIPSDQPQCFVVSPIQIIDSVGSVVDKNNLAATSLYKNNLSLVNPFLGLCYGNYIYS
STPLIHKKVFEIVGLFDVAAQPHDDWDMYLRILYAGVPFFRYTDSALSVWRIHDSNESHKIKAMLLSKCYVEKKLLELNL
VAPVREVVTINLLFDNVELAHLFYKENNTPEFRFLMKRYLPSLIRVFFVRFNKTFELDKILFRRIRKIILKSFRRYIVSF
LRCNG

Sequences:

>Translated_325_residues
MREYLISVIIAVYNPNAIFLQKAIQSVLNQSFPVLELILVNDGGNEEFRNLLPTDSRIKVFRKVNEGVALARNYAIQQSQ
GEYIAFLDQDDYWFPHKLEKQISMIPSDQPQCFVVSPIQIIDSVGSVVDKNNLAATSLYKNNLSLVNPFLGLCYGNYIYS
STPLIHKKVFEIVGLFDVAAQPHDDWDMYLRILYAGVPFFRYTDSALSVWRIHDSNESHKIKAMLLSKCYVEKKLLELNL
VAPVREVVTINLLFDNVELAHLFYKENNTPEFRFLMKRYLPSLIRVFFVRFNKTFELDKILFRRIRKIILKSFRRYIVSF
LRCNG
>Mature_325_residues
MREYLISVIIAVYNPNAIFLQKAIQSVLNQSFPVLELILVNDGGNEEFRNLLPTDSRIKVFRKVNEGVALARNYAIQQSQ
GEYIAFLDQDDYWFPHKLEKQISMIPSDQPQCFVVSPIQIIDSVGSVVDKNNLAATSLYKNNLSLVNPFLGLCYGNYIYS
STPLIHKKVFEIVGLFDVAAQPHDDWDMYLRILYAGVPFFRYTDSALSVWRIHDSNESHKIKAMLLSKCYVEKKLLELNL
VAPVREVVTINLLFDNVELAHLFYKENNTPEFRFLMKRYLPSLIRVFFVRFNKTFELDKILFRRIRKIILKSFRRYIVSF
LRCNG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 37886; Mature: 37886

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREYLISVIIAVYNPNAIFLQKAIQSVLNQSFPVLELILVNDGGNEEFRNLLPTDSRIKV
CHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHCCCCHHHHH
FRKVNEGVALARNYAIQQSQGEYIAFLDQDDYWFPHKLEKQISMIPSDQPQCFVVSPIQI
HHHHHCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEECHHHH
IDSVGSVVDKNNLAATSLYKNNLSLVNPFLGLCYGNYIYSSTPLIHKKVFEIVGLFDVAA
HHHHHHHHCCCCCEEHHHHHCCHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHCC
QPHDDWDMYLRILYAGVPFFRYTDSALSVWRIHDSNESHKIKAMLLSKCYVEKKLLELNL
CCCCCHHHHHHHHHHCCCHHEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
VAPVREVVTINLLFDNVELAHLFYKENNTPEFRFLMKRYLPSLIRVFFVRFNKTFELDKI
HHHHHHHEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LFRRIRKIILKSFRRYIVSFLRCNG
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MREYLISVIIAVYNPNAIFLQKAIQSVLNQSFPVLELILVNDGGNEEFRNLLPTDSRIKV
CHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHCCCCHHHHH
FRKVNEGVALARNYAIQQSQGEYIAFLDQDDYWFPHKLEKQISMIPSDQPQCFVVSPIQI
HHHHHCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEECHHHH
IDSVGSVVDKNNLAATSLYKNNLSLVNPFLGLCYGNYIYSSTPLIHKKVFEIVGLFDVAA
HHHHHHHHCCCCCEEHHHHHCCHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHCC
QPHDDWDMYLRILYAGVPFFRYTDSALSVWRIHDSNESHKIKAMLLSKCYVEKKLLELNL
CCCCCHHHHHHHHHHCCCHHEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
VAPVREVVTINLLFDNVELAHLFYKENNTPEFRFLMKRYLPSLIRVFFVRFNKTFELDKI
HHHHHHHEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LFRRIRKIILKSFRRYIVSFLRCNG
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]