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The map label for this gene is rimP

Identifier: 78189425

GI number: 78189425

Start: 1931513

End: 1932052

Strand: Reverse

Name: rimP

Synonym: Cag_1464

Alternate gene names: 78189425

Gene position: 1932052-1931513 (Counterclockwise)

Preceding gene: 78189426

Following gene: 78189424

Centisome position: 75.12

GC content: 47.59

Gene sequence:

>540_bases
ATGCAGGATAGAGTGGAGCGTGTAACGCGCTATATAGATAATGTTATGGCTAACACCGAAGGCACTCGTGCTGAAGGCGT
TTATGTGGTTTCGGTAGCGCTGAAAGGGCGTGCTGGGCAACAAAAGCTTGAGGTGTTGGTTGATAGCGATAAGGGGATTG
CCGTTGAGCAATGTGCTTGGGTTAGTCGCCGAATTCTTGAAAAGCTTGAGGAAGATGATGAGCCGTTAAGCGAAGAAATT
GCTATAGAAGTTTCCTCACCTGGGCTTGGTACCCCTTTACAGTTGCCACGTCAATATTATCGTCATCTTGGTAAGCTGCT
GCATGTTCGTTACCGCACGCCTGAAGGTGCAGAAGCTGAGATTGAGGGCTACTTGCAGGAGGCACAGCTTGATGGAGTTA
ATGGGGGTGATAGTGCGGATTCGGTTATTGTGCTAAAGCCTAAAGTGCAGGGTAAGCGCCCACGGAATGCTCAGCCACTT
GAAAATATTAGGTTGCCATTAAGCAGAATTATAAAAGCGGTACCTGAAGCAGAATTATAG

Upstream 100 bases:

>100_bases
GAACTCCCCACTTTTTTGTTTTCTACGGGTTGCGCTTGCGCTTGCGCTTGCGCTTGCGCTTTATGGCGCTTTGAGGCAGC
CGAAATTTTCGATTTTTTTG

Downstream 100 bases:

>100_bases
GAAAATTTTTAGTACACCATTTTTTAATAACCTTGGGATTGAGATGGCTAAAAAGAAAATAAAGGACGAAGGGCAAGAAC
GGCGGTTACAAATTGCCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MQDRVERVTRYIDNVMANTEGTRAEGVYVVSVALKGRAGQQKLEVLVDSDKGIAVEQCAWVSRRILEKLEEDDEPLSEEI
AIEVSSPGLGTPLQLPRQYYRHLGKLLHVRYRTPEGAEAEIEGYLQEAQLDGVNGGDSADSVIVLKPKVQGKRPRNAQPL
ENIRLPLSRIIKAVPEAEL

Sequences:

>Translated_179_residues
MQDRVERVTRYIDNVMANTEGTRAEGVYVVSVALKGRAGQQKLEVLVDSDKGIAVEQCAWVSRRILEKLEEDDEPLSEEI
AIEVSSPGLGTPLQLPRQYYRHLGKLLHVRYRTPEGAEAEIEGYLQEAQLDGVNGGDSADSVIVLKPKVQGKRPRNAQPL
ENIRLPLSRIIKAVPEAEL
>Mature_179_residues
MQDRVERVTRYIDNVMANTEGTRAEGVYVVSVALKGRAGQQKLEVLVDSDKGIAVEQCAWVSRRILEKLEEDDEPLSEEI
AIEVSSPGLGTPLQLPRQYYRHLGKLLHVRYRTPEGAEAEIEGYLQEAQLDGVNGGDSADSVIVLKPKVQGKRPRNAQPL
ENIRLPLSRIIKAVPEAEL

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_CHLCH (Q3AQK5)

Other databases:

- EMBL:   CP000108
- RefSeq:   YP_379763.1
- ProteinModelPortal:   Q3AQK5
- STRING:   Q3AQK5
- GeneID:   3746433
- GenomeReviews:   CP000108_GR
- KEGG:   cch:Cag_1464
- eggNOG:   COG0779
- HOGENOM:   HBG405620
- OMA:   PGIGEPI
- BioCyc:   CCHL340177:CAG_1464-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 19910; Mature: 19910

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDRVERVTRYIDNVMANTEGTRAEGVYVVSVALKGRAGQQKLEVLVDSDKGIAVEQCAW
CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHH
VSRRILEKLEEDDEPLSEEIAIEVSSPGLGTPLQLPRQYYRHLGKLLHVRYRTPEGAEAE
HHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
IEGYLQEAQLDGVNGGDSADSVIVLKPKVQGKRPRNAQPLENIRLPLSRIIKAVPEAEL
HHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MQDRVERVTRYIDNVMANTEGTRAEGVYVVSVALKGRAGQQKLEVLVDSDKGIAVEQCAW
CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHH
VSRRILEKLEEDDEPLSEEIAIEVSSPGLGTPLQLPRQYYRHLGKLLHVRYRTPEGAEAE
HHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
IEGYLQEAQLDGVNGGDSADSVIVLKPKVQGKRPRNAQPLENIRLPLSRIIKAVPEAEL
HHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA