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The map label for this gene is mtrC [H]

Identifier: 78189171

GI number: 78189171

Start: 1600889

End: 1602076

Strand: Reverse

Name: mtrC [H]

Synonym: Cag_1204

Alternate gene names: 78189171

Gene position: 1602076-1600889 (Counterclockwise)

Preceding gene: 78189172

Following gene: 78189170

Centisome position: 62.29

GC content: 47.98

Gene sequence:

>1188_bases
ATGAACAACATTGTAAAACCAGTACTTTTTATAGCCTTATGTAGCTCACTAACTCTTAGCGGTTGTGGCGATAAACCTGA
GATGGGGCGTGATGGTGCAAAAAATCAGGAACAGCCTGCGCTTGTAGTGCAGCAATTGCAACCAAGCGATGCAGTAGTGG
TGAGTCGCTATCCTGCTTTGCTGGAAGGCAAAGTAACGGTTGAAATTCGCCCGCAAGTGGATGGTGTGTTGCGCTCTATT
CTTATTGATGAAGGGGCATTTGTAAAAGCTGGTCAACCGCTTTTTGCTATTGATGATGCAGTGTATCGGGCGCAATATCA
AGGGGCGCTTGCCTCGCAACATGCGGCTGAGGCGCGTGTGGTGGCGGCAAAGCTTGAGGTTGAGCGTTTACAACCGTTGG
TGCAAAATCAAGTAATAGCTGAGGTGCAGCTTGAAACGGCTCGTGCTAATTATAAAGCGGCTCAAGCGGCGTTTGATGTG
GCGGTTGCAGCCACACGTTCGGCAAAGGTAAATCTTGATTACACGGTTATAAAAGCGCCAATTAACGGATTTGTTGGTAA
AATTACGTTGCGGCAGGGGAGCTTGGTTACAAAAAATCAAGCGGCGTGGCTTACCATGTTAAGCGATGTTAGTGAGGTGT
ATGCGTCGTTTAGCATTAGCGAAAATGAGCTGCTGCGCTTTCGTCAGCAATATGGGCAGAGTGATGGTCGGCTTGGTTCG
GGCAGTAATAATGTGCCTGCAACGCTTGTATTGGCTGATGGCACACGCTATCCCCAACAAGGGCGTTTGGCAACGTTGAG
CGGTCAATTTGATGCGCTGACGGGCGCTATGCGTGTTCGGGCAATTTTTGCCAATCCGCAAGCTTTGTTGCGTTCGGGTG
GCACGGGTTCGGTGGAGCTTTCAAGTTCTTACAACAATGTAATTCTTGTGCCACAATCAGCAACGGTTGAAATGCAAGAT
AAGGTTTTTGTGATGCGCTTGATGCAAGGCAACAAGGTGCAAAAGCAAGCCATTACCATTGCAGCTAAAAGTGGTAACAA
TTATGTTGTAACGGGTGGCATTCAAGCGGGCGACACCATTGTGTTAGTTGGTGCTGACCGCTTGCAAGATGGCATGGTTA
TTACACCACGTTATGAAACTTCACCTGCACAATCTGCAACAATTAACAGTGCTGTTAAGCGCCCATAA

Upstream 100 bases:

>100_bases
TTATAGCAATGATCTGTTAAGAGAAAAGCTATAATTTTTATATATGTTTCAATTGCATGTTCAAAATTGAAAGTAAACAT
TTTTATTAAAGAAAAATCAA

Downstream 100 bases:

>100_bases
ACGTTACTCTTTTTTCTCTGCTTTTTTAAATCAACAGCTATGTTTGAGCGTTTTATTTCCCGCCCTGTACTTGCCACCGT
TATCTCCATTTTGTTAGTGA

Product: secretion protein HlyD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MNNIVKPVLFIALCSSLTLSGCGDKPEMGRDGAKNQEQPALVVQQLQPSDAVVVSRYPALLEGKVTVEIRPQVDGVLRSI
LIDEGAFVKAGQPLFAIDDAVYRAQYQGALASQHAAEARVVAAKLEVERLQPLVQNQVIAEVQLETARANYKAAQAAFDV
AVAATRSAKVNLDYTVIKAPINGFVGKITLRQGSLVTKNQAAWLTMLSDVSEVYASFSISENELLRFRQQYGQSDGRLGS
GSNNVPATLVLADGTRYPQQGRLATLSGQFDALTGAMRVRAIFANPQALLRSGGTGSVELSSSYNNVILVPQSATVEMQD
KVFVMRLMQGNKVQKQAITIAAKSGNNYVVTGGIQAGDTIVLVGADRLQDGMVITPRYETSPAQSATINSAVKRP

Sequences:

>Translated_395_residues
MNNIVKPVLFIALCSSLTLSGCGDKPEMGRDGAKNQEQPALVVQQLQPSDAVVVSRYPALLEGKVTVEIRPQVDGVLRSI
LIDEGAFVKAGQPLFAIDDAVYRAQYQGALASQHAAEARVVAAKLEVERLQPLVQNQVIAEVQLETARANYKAAQAAFDV
AVAATRSAKVNLDYTVIKAPINGFVGKITLRQGSLVTKNQAAWLTMLSDVSEVYASFSISENELLRFRQQYGQSDGRLGS
GSNNVPATLVLADGTRYPQQGRLATLSGQFDALTGAMRVRAIFANPQALLRSGGTGSVELSSSYNNVILVPQSATVEMQD
KVFVMRLMQGNKVQKQAITIAAKSGNNYVVTGGIQAGDTIVLVGADRLQDGMVITPRYETSPAQSATINSAVKRP
>Mature_395_residues
MNNIVKPVLFIALCSSLTLSGCGDKPEMGRDGAKNQEQPALVVQQLQPSDAVVVSRYPALLEGKVTVEIRPQVDGVLRSI
LIDEGAFVKAGQPLFAIDDAVYRAQYQGALASQHAAEARVVAAKLEVERLQPLVQNQVIAEVQLETARANYKAAQAAFDV
AVAATRSAKVNLDYTVIKAPINGFVGKITLRQGSLVTKNQAAWLTMLSDVSEVYASFSISENELLRFRQQYGQSDGRLGS
GSNNVPATLVLADGTRYPQQGRLATLSGQFDALTGAMRVRAIFANPQALLRSGGTGSVELSSSYNNVILVPQSATVEMQD
KVFVMRLMQGNKVQKQAITIAAKSGNNYVVTGGIQAGDTIVLVGADRLQDGMVITPRYETSPAQSATINSAVKRP

Specific function: Cell membrane lipoprotein, involved in cell membrane permeability to hydrophobic compounds such as antibiotics, dyes and detergents [H]

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1786668, Length=366, Percent_Identity=31.4207650273224, Blast_Score=158, Evalue=6e-40,
Organism=Escherichia coli, GI1789929, Length=377, Percent_Identity=31.2997347480106, Blast_Score=151, Evalue=9e-38,
Organism=Escherichia coli, GI1789665, Length=380, Percent_Identity=29.4736842105263, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI87082036, Length=338, Percent_Identity=27.810650887574, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI87081796, Length=316, Percent_Identity=27.2151898734177, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI87081951, Length=175, Percent_Identity=32, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 42223; Mature: 42223

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNIVKPVLFIALCSSLTLSGCGDKPEMGRDGAKNQEQPALVVQQLQPSDAVVVSRYPAL
CCCHHHHHHHHHHHHHCEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCE
LEGKVTVEIRPQVDGVLRSILIDEGAFVKAGQPLFAIDDAVYRAQYQGALASQHAAEARV
ECCEEEEEECCCHHHHHHHHHHCCCCEEECCCCEEEEHHHHHHHHHCCHHHHHHHHHHEE
VAAKLEVERLQPLVQNQVIAEVQLETARANYKAAQAAFDVAVAATRSAKVNLDYTVIKAP
EEEHHHHHHHHHHHHHHHEEEEEEEHHHCCHHHHHHHHHHHEEEECCEEEEEEEEEEEEC
INGFVGKITLRQGSLVTKNQAAWLTMLSDVSEVYASFSISENELLRFRQQYGQSDGRLGS
CCCCEEEEEEECCCEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC
GSNNVPATLVLADGTRYPQQGRLATLSGQFDALTGAMRVRAIFANPQALLRSGGTGSVEL
CCCCCCEEEEEECCCCCCCCCCEEEECCCHHHHHHHEEEEEEECCCHHHHHCCCCCEEEE
SSSYNNVILVPQSATVEMQDKVFVMRLMQGNKVQKQAITIAAKSGNNYVVTGGIQAGDTI
ECCCCCEEEEECCCCEEHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEECCCCCCCEE
VLVGADRLQDGMVITPRYETSPAQSATINSAVKRP
EEEECCCCCCCEEEECCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MNNIVKPVLFIALCSSLTLSGCGDKPEMGRDGAKNQEQPALVVQQLQPSDAVVVSRYPAL
CCCHHHHHHHHHHHHHCEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCE
LEGKVTVEIRPQVDGVLRSILIDEGAFVKAGQPLFAIDDAVYRAQYQGALASQHAAEARV
ECCEEEEEECCCHHHHHHHHHHCCCCEEECCCCEEEEHHHHHHHHHCCHHHHHHHHHHEE
VAAKLEVERLQPLVQNQVIAEVQLETARANYKAAQAAFDVAVAATRSAKVNLDYTVIKAP
EEEHHHHHHHHHHHHHHHEEEEEEEHHHCCHHHHHHHHHHHEEEECCEEEEEEEEEEEEC
INGFVGKITLRQGSLVTKNQAAWLTMLSDVSEVYASFSISENELLRFRQQYGQSDGRLGS
CCCCEEEEEEECCCEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC
GSNNVPATLVLADGTRYPQQGRLATLSGQFDALTGAMRVRAIFANPQALLRSGGTGSVEL
CCCCCCEEEEEECCCCCCCCCCEEEECCCHHHHHHHEEEEEEECCCHHHHHCCCCCEEEE
SSSYNNVILVPQSATVEMQDKVFVMRLMQGNKVQKQAITIAAKSGNNYVVTGGIQAGDTI
ECCCCCEEEEECCCCEEHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEECCCCCCCEE
VLVGADRLQDGMVITPRYETSPAQSATINSAVKRP
EEEECCCCCCCEEEECCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8196548 [H]