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The map label for this gene is glcD [H]

Identifier: 78189130

GI number: 78189130

Start: 1557074

End: 1558570

Strand: Reverse

Name: glcD [H]

Synonym: Cag_1163

Alternate gene names: 78189130

Gene position: 1558570-1557074 (Counterclockwise)

Preceding gene: 78189131

Following gene: 78189129

Centisome position: 60.6

GC content: 46.29

Gene sequence:

>1497_bases
ATGATTGTTAGCACAAAGCAAGAAACTATTGCTGGTTATCTTAACGATACCAGCCACATTAAAGCAGGGCATTCGCCCGC
TATTTATTTTCCTGAATCGGTAGAAGAAATTGCTGAACTCCTGAGCAATGCCACAACGGATGGAAGGCGCTTTATGTTGT
CGGGCAATGGCACGGGCACTACAGGTGGACGTATTCCGTTTGGCGACTGCATTCTTTCGCTGCAAAAGCTCAACCACATC
GGTAGGGTAACCGAGCAAGGTGAAGGCAAAGCTACGATTACCGTGCAAGCTGGTGCACTTTTGGGTGATATTCAAAAGGT
GGTTGAGCAGCAAGGATGGCTCTATCCCCCAGACCCCACCGAAAAGCTCTGCTTTATTGGTAGCACCATTGCCAACAACT
CGTCAGGTGCACGTACCTTCCGTTACGGTGCAACTCGTAACCACATTGAGCGCTTGCTGATTGTTTTACCAACGGGTGAT
ATGCTCAATTTGCGGCGCGGCACCTGCTTTGCGGATGCCGATGGCTTTTTTAATTTGTCCTTGCTTTCAGGTAAAGAGTT
ACGGTTGCAACGCCCTAACTACGTTATGCCCAATACCAGTAAGCATAATGCAGGGTATTTTACGAAAGAGGGGTTAGATG
CGCTTGACCTTTTTATTGGCTCAGAAGGCACCCTTGGTGTTATTGCTGAAGCTGAATTGCGCCTTATTGCGCTGCCCGAA
GCAATTATTTCAAGCCTTGTCTATTTCTCTCATATTGATGATCTCTTTACCTTTATCCATGAATTACGTCATCCTGAAGA
TGGCGTGTTGCCTCGTGCAATTGAGTTATTTGAAAAAAATGCTCTCCACTTTTTAGCGCAGCGTTACCCTGAAGTACCAG
CAGAAAGTGCAGGCGCCATCTTTTTGGAGCAAGAAATAACCGCCGCAACTGAAGAGCGCCACCTCGACCGATTACTTGCA
CTCATGGAGCGCTGCAACGCCATGAGCGACCATTCGTGGCTTGCGCTTGACCCGCAAGAGCAAGCACGCTTGCGTGAATT
TCGCCATAGTTTGCCGCTTTTAGTAAACGACTGGCTTAACCAGCAGCAAGAGAGCAAAATTAGCGCCGATATGGCTGTAC
CCGAAGCCAACTTCCGAGAATTGTACAACTATTACTGTTCAGCTTGCGAAGGTGAGGGCTTTGTCTATATTATTTTTGGT
CACGTTGGTAACGACCATGTCCATTTGAACATTCTGCCTCGCAACCACGAAGAGTTTGTGCGAGCAAAAGCGCTTTATCG
GGTTTTTATTAAAAAGGTGATGGAACTTGGAGGCACGCTTTCAGCCGAACATGGTATTGGTAAGCTCAAAGCCGAATATT
TGAGTAGTATGTACAGTGCAGAAGCCATTCGCGAAATGGTGCGCATTAAGCGCTTTTTCGATCCTCATTTAACGCTTAAT
ATTGGAAATGTTCTCTTGAAAGAATATTTGATAGATGAAAAATCATCGGTTATGTGA

Upstream 100 bases:

>100_bases
AGCCATCACCCAATAGCGAAATTGATAAAGATAAAGGCAACAGTACCTCTCCGTCCGTTCAAAAATCAGCAAACGACACA
CAGAGCGAATCACTTCCAGA

Downstream 100 bases:

>100_bases
TGCTTTTTTAGCCTGAATTATTCACCTTCGTCATTCCCGCGAAAGCGGGAATCCAGAAATAAGAAAACTCAGTAAAAGAA
CATTACTCCTATTAAATCTG

Product: oxidoreductase, FAD-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MIVSTKQETIAGYLNDTSHIKAGHSPAIYFPESVEEIAELLSNATTDGRRFMLSGNGTGTTGGRIPFGDCILSLQKLNHI
GRVTEQGEGKATITVQAGALLGDIQKVVEQQGWLYPPDPTEKLCFIGSTIANNSSGARTFRYGATRNHIERLLIVLPTGD
MLNLRRGTCFADADGFFNLSLLSGKELRLQRPNYVMPNTSKHNAGYFTKEGLDALDLFIGSEGTLGVIAEAELRLIALPE
AIISSLVYFSHIDDLFTFIHELRHPEDGVLPRAIELFEKNALHFLAQRYPEVPAESAGAIFLEQEITAATEERHLDRLLA
LMERCNAMSDHSWLALDPQEQARLREFRHSLPLLVNDWLNQQQESKISADMAVPEANFRELYNYYCSACEGEGFVYIIFG
HVGNDHVHLNILPRNHEEFVRAKALYRVFIKKVMELGGTLSAEHGIGKLKAEYLSSMYSAEAIREMVRIKRFFDPHLTLN
IGNVLLKEYLIDEKSSVM

Sequences:

>Translated_498_residues
MIVSTKQETIAGYLNDTSHIKAGHSPAIYFPESVEEIAELLSNATTDGRRFMLSGNGTGTTGGRIPFGDCILSLQKLNHI
GRVTEQGEGKATITVQAGALLGDIQKVVEQQGWLYPPDPTEKLCFIGSTIANNSSGARTFRYGATRNHIERLLIVLPTGD
MLNLRRGTCFADADGFFNLSLLSGKELRLQRPNYVMPNTSKHNAGYFTKEGLDALDLFIGSEGTLGVIAEAELRLIALPE
AIISSLVYFSHIDDLFTFIHELRHPEDGVLPRAIELFEKNALHFLAQRYPEVPAESAGAIFLEQEITAATEERHLDRLLA
LMERCNAMSDHSWLALDPQEQARLREFRHSLPLLVNDWLNQQQESKISADMAVPEANFRELYNYYCSACEGEGFVYIIFG
HVGNDHVHLNILPRNHEEFVRAKALYRVFIKKVMELGGTLSAEHGIGKLKAEYLSSMYSAEAIREMVRIKRFFDPHLTLN
IGNVLLKEYLIDEKSSVM
>Mature_498_residues
MIVSTKQETIAGYLNDTSHIKAGHSPAIYFPESVEEIAELLSNATTDGRRFMLSGNGTGTTGGRIPFGDCILSLQKLNHI
GRVTEQGEGKATITVQAGALLGDIQKVVEQQGWLYPPDPTEKLCFIGSTIANNSSGARTFRYGATRNHIERLLIVLPTGD
MLNLRRGTCFADADGFFNLSLLSGKELRLQRPNYVMPNTSKHNAGYFTKEGLDALDLFIGSEGTLGVIAEAELRLIALPE
AIISSLVYFSHIDDLFTFIHELRHPEDGVLPRAIELFEKNALHFLAQRYPEVPAESAGAIFLEQEITAATEERHLDRLLA
LMERCNAMSDHSWLALDPQEQARLREFRHSLPLLVNDWLNQQQESKISADMAVPEANFRELYNYYCSACEGEGFVYIIFG
HVGNDHVHLNILPRNHEEFVRAKALYRVFIKKVMELGGTLSAEHGIGKLKAEYLSSMYSAEAIREMVRIKRFFDPHLTLN
IGNVLLKEYLIDEKSSVM

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI37595754, Length=476, Percent_Identity=26.890756302521, Blast_Score=145, Evalue=7e-35,
Organism=Homo sapiens, GI37595756, Length=468, Percent_Identity=26.9230769230769, Blast_Score=144, Evalue=3e-34,
Organism=Homo sapiens, GI119964728, Length=489, Percent_Identity=21.881390593047, Blast_Score=86, Evalue=7e-17,
Organism=Escherichia coli, GI1787977, Length=499, Percent_Identity=24.8496993987976, Blast_Score=89, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17534361, Length=487, Percent_Identity=25.0513347022587, Blast_Score=139, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI71992373, Length=493, Percent_Identity=22.5152129817444, Blast_Score=108, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI71992381, Length=491, Percent_Identity=21.7922606924644, Blast_Score=102, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI71992392, Length=392, Percent_Identity=22.7040816326531, Blast_Score=94, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6320027, Length=482, Percent_Identity=25.7261410788382, Blast_Score=123, Evalue=8e-29,
Organism=Saccharomyces cerevisiae, GI6320023, Length=498, Percent_Identity=23.6947791164659, Blast_Score=120, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6320764, Length=501, Percent_Identity=23.3532934131737, Blast_Score=113, Evalue=8e-26,
Organism=Drosophila melanogaster, GI18921117, Length=473, Percent_Identity=26.215644820296, Blast_Score=125, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24639277, Length=473, Percent_Identity=26.215644820296, Blast_Score=125, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24639275, Length=473, Percent_Identity=26.215644820296, Blast_Score=125, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 55715; Mature: 55715

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVSTKQETIAGYLNDTSHIKAGHSPAIYFPESVEEIAELLSNATTDGRRFMLSGNGTGT
CCCCCCHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCEEEEECCCCCC
TGGRIPFGDCILSLQKLNHIGRVTEQGEGKATITVQAGALLGDIQKVVEQQGWLYPPDPT
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCC
EKLCFIGSTIANNSSGARTFRYGATRNHIERLLIVLPTGDMLNLRRGTCFADADGFFNLS
CCEEEEECHHCCCCCCCEEEECCCCHHHHCEEEEEECCCCEEECCCCCEEECCCCCEEEE
LLSGKELRLQRPNYVMPNTSKHNAGYFTKEGLDALDLFIGSEGTLGVIAEAELRLIALPE
EECCCCEEEECCCEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCEEEEECCH
AIISSLVYFSHIDDLFTFIHELRHPEDGVLPRAIELFEKNALHFLAQRYPEVPAESAGAI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
FLEQEITAATEERHLDRLLALMERCNAMSDHSWLALDPQEQARLREFRHSLPLLVNDWLN
EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHCCCHHHHHHHC
QQQESKISADMAVPEANFRELYNYYCSACEGEGFVYIIFGHVGNDHVHLNILPRNHEEFV
HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEECCCHHHHH
RAKALYRVFIKKVMELGGTLSAEHGIGKLKAEYLSSMYSAEAIREMVRIKRFFDPHLTLN
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
IGNVLLKEYLIDEKSSVM
HHHHHHHHHHHCCHHCCC
>Mature Secondary Structure
MIVSTKQETIAGYLNDTSHIKAGHSPAIYFPESVEEIAELLSNATTDGRRFMLSGNGTGT
CCCCCCHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCEEEEECCCCCC
TGGRIPFGDCILSLQKLNHIGRVTEQGEGKATITVQAGALLGDIQKVVEQQGWLYPPDPT
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCC
EKLCFIGSTIANNSSGARTFRYGATRNHIERLLIVLPTGDMLNLRRGTCFADADGFFNLS
CCEEEEECHHCCCCCCCEEEECCCCHHHHCEEEEEECCCCEEECCCCCEEECCCCCEEEE
LLSGKELRLQRPNYVMPNTSKHNAGYFTKEGLDALDLFIGSEGTLGVIAEAELRLIALPE
EECCCCEEEECCCEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCEEEEECCH
AIISSLVYFSHIDDLFTFIHELRHPEDGVLPRAIELFEKNALHFLAQRYPEVPAESAGAI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
FLEQEITAATEERHLDRLLALMERCNAMSDHSWLALDPQEQARLREFRHSLPLLVNDWLN
EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHCCCHHHHHHHC
QQQESKISADMAVPEANFRELYNYYCSACEGEGFVYIIFGHVGNDHVHLNILPRNHEEFV
HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEECCCHHHHH
RAKALYRVFIKKVMELGGTLSAEHGIGKLKAEYLSSMYSAEAIREMVRIKRFFDPHLTLN
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
IGNVLLKEYLIDEKSSVM
HHHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]