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The map label for this gene is 78189052

Identifier: 78189052

GI number: 78189052

Start: 1467362

End: 1467760

Strand: Reverse

Name: 78189052

Synonym: Cag_1085

Alternate gene names: NA

Gene position: 1467760-1467362 (Counterclockwise)

Preceding gene: 78189056

Following gene: 78189051

Centisome position: 57.07

GC content: 52.38

Gene sequence:

>399_bases
ATGAAACGGCAACCCCACACCCTTCCCTTGAGCACAACACCTATAACGCCATGCAATACCTTACACACCCTTTACACTGT
TGCCTATTGGCTGACGCAACAAAGCAATGAAGCTGAGGAACTTGTACGCGCTGCCTATCAACACCGTCAGGGCGATACAA
CATTGCACTCCTTGCTTGATGCTCTGCGCCACCATGCGCACAGAGTTGGAGCTACCACCAATCCCCTTGAAGCCGAAGCG
CTTGATATTCGTTTCACGGTTTTGCTTGCTGACGTTGCACGGCTCAAGCATAGCGAAATTGCTGCTATTGTGCAGCAACC
GCTTGCAGTAGTGCGCTATTGGCTGCTTATTGGGCGCCAGCAACTTGCCTCCGAGCAAACACTTCGCGCTTCGGCGTAA

Upstream 100 bases:

>100_bases
ACAGGATTAAATATATCCACTATACCAAAACAAAAAACAGACGCATCAGCAAAAGCTTTGTAACGCAACTGCCAGATGCC
CATAGATAACGAGGTGAACT

Downstream 100 bases:

>100_bases
CTTGCTATGACTAATGAAACATCGAAGAAATAGATAAAACATCCCTTCTACGGCGCCACCTCTTAACAGCGTGGCGCTCT
TTTTTTGGAACATCTCCCTC

Product: hypothetical protein

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MKRQPHTLPLSTTPITPCNTLHTLYTVAYWLTQQSNEAEELVRAAYQHRQGDTTLHSLLDALRHHAHRVGATTNPLEAEA
LDIRFTVLLADVARLKHSEIAAIVQQPLAVVRYWLLIGRQQLASEQTLRASA

Sequences:

>Translated_132_residues
MKRQPHTLPLSTTPITPCNTLHTLYTVAYWLTQQSNEAEELVRAAYQHRQGDTTLHSLLDALRHHAHRVGATTNPLEAEA
LDIRFTVLLADVARLKHSEIAAIVQQPLAVVRYWLLIGRQQLASEQTLRASA
>Mature_132_residues
MKRQPHTLPLSTTPITPCNTLHTLYTVAYWLTQQSNEAEELVRAAYQHRQGDTTLHSLLDALRHHAHRVGATTNPLEAEA
LDIRFTVLLADVARLKHSEIAAIVQQPLAVVRYWLLIGRQQLASEQTLRASA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14850; Mature: 14850

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRQPHTLPLSTTPITPCNTLHTLYTVAYWLTQQSNEAEELVRAAYQHRQGDTTLHSLLD
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
ALRHHAHRVGATTNPLEAEALDIRFTVLLADVARLKHSEIAAIVQQPLAVVRYWLLIGRQ
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLASEQTLRASA
HHHHHHHHHCCC
>Mature Secondary Structure
MKRQPHTLPLSTTPITPCNTLHTLYTVAYWLTQQSNEAEELVRAAYQHRQGDTTLHSLLD
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
ALRHHAHRVGATTNPLEAEALDIRFTVLLADVARLKHSEIAAIVQQPLAVVRYWLLIGRQ
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLASEQTLRASA
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA