Click here to switch to the map view.

The map label for this gene is 78188973

Identifier: 78188973

GI number: 78188973

Start: 1345334

End: 1345981

Strand: Reverse

Name: 78188973

Synonym: Cag_1006

Alternate gene names: NA

Gene position: 1345981-1345334 (Counterclockwise)

Preceding gene: 78188974

Following gene: 78188972

Centisome position: 52.33

GC content: 45.83

Gene sequence:

>648_bases
ATGTATCCCGAATCCGACTTTATAGCAATCTCAGCCCTGCAACACTTTGCCTTTTGCCCTCGGCAGTGTGCCCTTATCCA
TCTTGAACAAATATGGAGTGAAAACATGTACACTGCCGAAGGTAGAGAGCTGCACGAGCGGGTAGATGAAGGCAAAACTT
CCTATAAAAGCGGTGTACGTATTACACGCAGCGAACCCTTACGAAATGCGACATTAGGCATTGCCGGTGTTGCCGATGTA
ATAGAATGGCATAAGCAACCAAATGGAAAAGAGCTTCCCTTTCCCGTTGAATACAAACGAGGCAAACCAAAAAAGCATAA
TGCCGACAAAATTCAGCTTTGTGCTCAAGCACTCTGTCTCGAAGAGATGCTTGGCATTCACATTCCATCAGGCGCACTCT
TTTATGGTGAAACAATGCACCGACTTGAGGTAGAATTTACCCCTCCATTGCGAGAACAAACAAGAGGGGCAGCAGAAGGA
ATCCATGAATTATTTGAACGAGGCTTAACCCCACCACCCGATTACAGCGCAAAATGCAAACAATGTTCGTTGCTTGAGGT
TTGCCAACCAAATCTTTTAGCACAACACAACACAGCAAGAAATTACCTTGCCTCACTTGTGCAAACGCTATCAGCGGAGG
ATGCGTGA

Upstream 100 bases:

>100_bases
CTCTTCATGTGAATGAGGATGGTACGTACCGGTTGGACGATCTTGAAGGTTTAACGCCTGAGTGTATAAATGGTTTTTGA
GCATCAGATAAATGTAGTTC

Downstream 100 bases:

>100_bases
AAAAATTTCTTAATACACTGTACGTAACCTCTCAAGGAGCGTATCTCTCAAAAGAGGGAGAATGTGCCGTTATAAGCATT
GAAAAAGAGGTAAAAACCCG

Product: hypothetical protein

Products: NA

Alternate protein names: CRISPR-Associated Exonuclease Cas4 Family Protein; RecB Family Exonuclease; CRISPR-Associated Cas1/Cas4 Family Protein; CRISPR-Associated Exonuclease Cas4 Family; Endonuclease; Exonuclease RecB Family Protein; CRISPR-Associated Cas1 Family Protein; CRISPR-Associated Protein; Cas4 Family CRISPR-Associated Protein; Exonuclease N; CRISPR-Associated ; PE-PGRS Family Protein; CRISPR-Associated RecB Family Exonuclease Cas4b; RecB Family Exonuclease Protein

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MYPESDFIAISALQHFAFCPRQCALIHLEQIWSENMYTAEGRELHERVDEGKTSYKSGVRITRSEPLRNATLGIAGVADV
IEWHKQPNGKELPFPVEYKRGKPKKHNADKIQLCAQALCLEEMLGIHIPSGALFYGETMHRLEVEFTPPLREQTRGAAEG
IHELFERGLTPPPDYSAKCKQCSLLEVCQPNLLAQHNTARNYLASLVQTLSAEDA

Sequences:

>Translated_215_residues
MYPESDFIAISALQHFAFCPRQCALIHLEQIWSENMYTAEGRELHERVDEGKTSYKSGVRITRSEPLRNATLGIAGVADV
IEWHKQPNGKELPFPVEYKRGKPKKHNADKIQLCAQALCLEEMLGIHIPSGALFYGETMHRLEVEFTPPLREQTRGAAEG
IHELFERGLTPPPDYSAKCKQCSLLEVCQPNLLAQHNTARNYLASLVQTLSAEDA
>Mature_215_residues
MYPESDFIAISALQHFAFCPRQCALIHLEQIWSENMYTAEGRELHERVDEGKTSYKSGVRITRSEPLRNATLGIAGVADV
IEWHKQPNGKELPFPVEYKRGKPKKHNADKIQLCAQALCLEEMLGIHIPSGALFYGETMHRLEVEFTPPLREQTRGAAEG
IHELFERGLTPPPDYSAKCKQCSLLEVCQPNLLAQHNTARNYLASLVQTLSAEDA

Specific function: Unknown

COG id: COG1468

COG function: function code L; RecB family exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24200; Mature: 24200

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYPESDFIAISALQHFAFCPRQCALIHLEQIWSENMYTAEGRELHERVDEGKTSYKSGVR
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCE
ITRSEPLRNATLGIAGVADVIEWHKQPNGKELPFPVEYKRGKPKKHNADKIQLCAQALCL
EECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
EEMLGIHIPSGALFYGETMHRLEVEFTPPLREQTRGAAEGIHELFERGLTPPPDYSAKCK
HHHHCCCCCCCCEECCCHHHHEEEEECCCHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHC
QCSLLEVCQPNLLAQHNTARNYLASLVQTLSAEDA
CCCHHHHHCCHHHHHCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MYPESDFIAISALQHFAFCPRQCALIHLEQIWSENMYTAEGRELHERVDEGKTSYKSGVR
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCE
ITRSEPLRNATLGIAGVADVIEWHKQPNGKELPFPVEYKRGKPKKHNADKIQLCAQALCL
EECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
EEMLGIHIPSGALFYGETMHRLEVEFTPPLREQTRGAAEGIHELFERGLTPPPDYSAKCK
HHHHCCCCCCCCEECCCHHHHEEEEECCCHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHC
QCSLLEVCQPNLLAQHNTARNYLASLVQTLSAEDA
CCCHHHHHCCHHHHHCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA