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The map label for this gene is rbn [C]

Identifier: 78188903

GI number: 78188903

Start: 1270957

End: 1272255

Strand: Reverse

Name: rbn [C]

Synonym: Cag_0935

Alternate gene names: 78188903

Gene position: 1272255-1270957 (Counterclockwise)

Preceding gene: 78188904

Following gene: 78188902

Centisome position: 49.46

GC content: 45.57

Gene sequence:

>1299_bases
ATGCTTATGAAAAAAGTGCCACACATCATTCATCGCGCCAATCAATCAGGCGGAAAACGCTATGAGCGTATGGTGGCATT
TGTAGCTTTTTTTCGTACCAATTTATTGCACGACCGTATTTTTATTAGTGCTGGCTCATTAGCCTTTCAAACCTTGCTTT
CTATAGTACCCGTGCTTGCCGTGGTACTTTCTGTGCTGAATTTGTTTGAAGTTTTCACGCCATTCCAGCACTCGCTTGAA
ACCTTTCTTGTAGAAAATTTTATGCCTGCCACAGGACGCTTGCTCCATGGCTATTTGCTCGAATTTGTTGGTAAAACGGG
TAACATCCCGCTGCTGGGTTCACTTCTGCTCTTTGTTATTGCTCTCTCCTTACTCTCTACGGTTGATCAAACGTTAAACG
ATATTTGGGGCATTCGGGCGCCGCGCAAGGCGTTGCAAGGTTTTACGCTTTATTGGACGGTGCTCACCTTAGGTCCATTG
TTGATTGTTAGTAGCCTTGCGGCAAGCTCCTATGTTTGGTACACAATTTTTACGGATGAAGGTGCTTTGTTTGAGCTAAA
AACGCGCTTGCTTGCCCTTTTCCCTTTTATAAACTCCATTGTGGCGTTTTTTCTACTTTATATGTTGGTGCCAAAACGTC
GTGTACGCATTGCTCATGCCTTTGCAGGGGCGCTTGTGGCTTCGTTGCTGCTGGAGCTTTCAAAACGGTGGTTTCTCTTT
TATGTAACACATGTTGCTACGTTTGAGCACATTTATGGAGCACTCTCAGTGGTTCCCATGCTTTTTTTCTGGGTCTATCT
TGCATGGGTGGTGGTGCTTGTTGGGGCAGAATTTGTTTATTGCTTGGGAGCTTTTGCGCCGTCCACTCCAACGGCTGAAG
CTCAAGGCTCCTTGCGTTACCTTTCGCTACCGCTTGCAGTACTTGCAACTCTCCATAACGCCATTGAAAAGGGGGCACCG
CTTTCTCTAAAAAGTTTGTCGAGAGAACTTTCAACGCTTCCGTTTAACCTGCTGCGCGATATGGTGGATCTGCTTCTTGA
TCGTCAAGTGCTGCATCTTTCCACTCGTGGCGAGTTGGCGCTTAGTCGTAATTTGCACGCTATGAGCCTGTACGAACTTT
ACCAAATAATTCCGCAACCAATAAACGCAACAGAAAAGAGCCTACTGTTTTCAGAAAGTAAAAGCGTACATTTAGCGCCG
CTAAGCCTTGAGGTTGAGGCGTGTTTGCAAGAGCGTATGGCAACGCCAATTGCGGAATTGCTTCAACATTCATTTCTTAA
AGCATCAACAGTAGATTAG

Upstream 100 bases:

>100_bases
TTAGTGCTCCTTACCAAAGTGAAATCCTCCTCAACCAATGTGCCGTCATTACAGTAAGTCCAAAGTTCTGAATTTTGAGT
TCTAACGCTCAGATTTATCA

Downstream 100 bases:

>100_bases
TGTCGTGTCAAACTCTTTCTGTCATGCTGAGCGAAACGAAGCATCCATACAATTTATCGCTGTTGGCTGGATTGTAAAAT
GGATTCCCGTTTGCGCAGGA

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MLMKKVPHIIHRANQSGGKRYERMVAFVAFFRTNLLHDRIFISAGSLAFQTLLSIVPVLAVVLSVLNLFEVFTPFQHSLE
TFLVENFMPATGRLLHGYLLEFVGKTGNIPLLGSLLLFVIALSLLSTVDQTLNDIWGIRAPRKALQGFTLYWTVLTLGPL
LIVSSLAASSYVWYTIFTDEGALFELKTRLLALFPFINSIVAFFLLYMLVPKRRVRIAHAFAGALVASLLLELSKRWFLF
YVTHVATFEHIYGALSVVPMLFFWVYLAWVVVLVGAEFVYCLGAFAPSTPTAEAQGSLRYLSLPLAVLATLHNAIEKGAP
LSLKSLSRELSTLPFNLLRDMVDLLLDRQVLHLSTRGELALSRNLHAMSLYELYQIIPQPINATEKSLLFSESKSVHLAP
LSLEVEACLQERMATPIAELLQHSFLKASTVD

Sequences:

>Translated_432_residues
MLMKKVPHIIHRANQSGGKRYERMVAFVAFFRTNLLHDRIFISAGSLAFQTLLSIVPVLAVVLSVLNLFEVFTPFQHSLE
TFLVENFMPATGRLLHGYLLEFVGKTGNIPLLGSLLLFVIALSLLSTVDQTLNDIWGIRAPRKALQGFTLYWTVLTLGPL
LIVSSLAASSYVWYTIFTDEGALFELKTRLLALFPFINSIVAFFLLYMLVPKRRVRIAHAFAGALVASLLLELSKRWFLF
YVTHVATFEHIYGALSVVPMLFFWVYLAWVVVLVGAEFVYCLGAFAPSTPTAEAQGSLRYLSLPLAVLATLHNAIEKGAP
LSLKSLSRELSTLPFNLLRDMVDLLLDRQVLHLSTRGELALSRNLHAMSLYELYQIIPQPINATEKSLLFSESKSVHLAP
LSLEVEACLQERMATPIAELLQHSFLKASTVD
>Mature_432_residues
MLMKKVPHIIHRANQSGGKRYERMVAFVAFFRTNLLHDRIFISAGSLAFQTLLSIVPVLAVVLSVLNLFEVFTPFQHSLE
TFLVENFMPATGRLLHGYLLEFVGKTGNIPLLGSLLLFVIALSLLSTVDQTLNDIWGIRAPRKALQGFTLYWTVLTLGPL
LIVSSLAASSYVWYTIFTDEGALFELKTRLLALFPFINSIVAFFLLYMLVPKRRVRIAHAFAGALVASLLLELSKRWFLF
YVTHVATFEHIYGALSVVPMLFFWVYLAWVVVLVGAEFVYCLGAFAPSTPTAEAQGSLRYLSLPLAVLATLHNAIEKGAP
LSLKSLSRELSTLPFNLLRDMVDLLLDRQVLHLSTRGELALSRNLHAMSLYELYQIIPQPINATEKSLLFSESKSVHLAP
LSLEVEACLQERMATPIAELLQHSFLKASTVD

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=276, Percent_Identity=36.9565217391304, Blast_Score=179, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y935_CHLCH (Q3AS27)

Other databases:

- EMBL:   CP000108
- RefSeq:   YP_379241.1
- STRING:   Q3AS27
- GeneID:   3747088
- GenomeReviews:   CP000108_GR
- KEGG:   cch:Cag_0935
- HOGENOM:   HBG405288
- OMA:   FLLYWAI
- ProtClustDB:   CLSK571629
- BioCyc:   CCHL340177:CAG_0935-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 48313; Mature: 48313

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x10c7baf4)-; HASH(0x10c31e8c)-; HASH(0x115a4f18)-; HASH(0x1110f018)-; HASH(0x114d7cdc)-; HASH(0x11119d94)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMKKVPHIIHRANQSGGKRYERMVAFVAFFRTNLLHDRIFISAGSLAFQTLLSIVPVLA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VVLSVLNLFEVFTPFQHSLETFLVENFMPATGRLLHGYLLEFVGKTGNIPLLGSLLLFVI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
ALSLLSTVDQTLNDIWGIRAPRKALQGFTLYWTVLTLGPLLIVSSLAASSYVWYTIFTDE
HHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECC
GALFELKTRLLALFPFINSIVAFFLLYMLVPKRRVRIAHAFAGALVASLLLELSKRWFLF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVTHVATFEHIYGALSVVPMLFFWVYLAWVVVLVGAEFVYCLGAFAPSTPTAEAQGSLRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
LSLPLAVLATLHNAIEKGAPLSLKSLSRELSTLPFNLLRDMVDLLLDRQVLHLSTRGELA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCCCCCHH
LSRNLHAMSLYELYQIIPQPINATEKSLLFSESKSVHLAPLSLEVEACLQERMATPIAEL
HHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCHHHHH
LQHSFLKASTVD
HHHHHHHHCCCH
>Mature Secondary Structure
MLMKKVPHIIHRANQSGGKRYERMVAFVAFFRTNLLHDRIFISAGSLAFQTLLSIVPVLA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VVLSVLNLFEVFTPFQHSLETFLVENFMPATGRLLHGYLLEFVGKTGNIPLLGSLLLFVI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
ALSLLSTVDQTLNDIWGIRAPRKALQGFTLYWTVLTLGPLLIVSSLAASSYVWYTIFTDE
HHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECC
GALFELKTRLLALFPFINSIVAFFLLYMLVPKRRVRIAHAFAGALVASLLLELSKRWFLF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVTHVATFEHIYGALSVVPMLFFWVYLAWVVVLVGAEFVYCLGAFAPSTPTAEAQGSLRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
LSLPLAVLATLHNAIEKGAPLSLKSLSRELSTLPFNLLRDMVDLLLDRQVLHLSTRGELA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCCCCCHH
LSRNLHAMSLYELYQIIPQPINATEKSLLFSESKSVHLAPLSLEVEACLQERMATPIAEL
HHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCHHHHH
LQHSFLKASTVD
HHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA