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The map label for this gene is srpC [H]

Identifier: 78188838

GI number: 78188838

Start: 1198650

End: 1200185

Strand: Reverse

Name: srpC [H]

Synonym: Cag_0868

Alternate gene names: 78188838

Gene position: 1200185-1198650 (Counterclockwise)

Preceding gene: 78188839

Following gene: 78188837

Centisome position: 46.66

GC content: 53.06

Gene sequence:

>1536_bases
ATGATGTTATTCCCGCGAAAGCGGGAATCCAGAAAAATCTTAATGGTTGGATTGAGCACAACAAAAAGAGTAAGAACTAA
AATCATTATGAAGAAAATCATTTGGCTTGCTCTGCCAACAGCCATTGTGCTTGCAGGGTGCAGTTCCTCCCATACCTTAC
AATCCCCAACCATAGCGCTAAACGATCGCTATCAGCAAAACAGCGCACATCCGCAACTCACGGAAGCCGAGGGGCAGCAG
CAACAGCTTGTAGTCGAGAGTGTTGCGGCACGCTGGTGGGAAGCCTTTGGTTCACCCAAACTGAATCGCTTGATTGAGCA
AAGCCTCAAGCAAAACCCAACGCTTGCCGCCGCTGAAGCCACACTTCGCCAAGCCGAAGCATTAGCAAATGCAAAGTACA
ACAGCACCCTCTATCCCCGCCTTGACGCCGTTGGCAGTGCGCAACGCTTGCAACTCAACAACAGCCGCAACGGAGTGGAA
GGAGGCGAAAAGCGCTTTAATCTTTACAATGGTTCACTCAGCAGCAGTTACAATTTCGACCTTTCAGGAGCCAACAATCG
CCAACTTGATGCCTTGCAAGCCAAAGCAAACTACCAACACTACCAATTAGCGGGCGCACGGTTACGTCTTGCTACAGAGG
TGGCAGTTACCGCTATTCGTCAAGCGCAACTTGGCGCACAAATGGAAGCGTTAGAGCGCCTTATTGCGCTCGGCAATGAG
CAGCTTACCATTAACCGCGAACGCTTGCGGCTTGGAGCAATTGCAAGCCACGAATTGCTTGAAGTAGAGCGCATGGTTGC
CGAACAACGTGCAGCATTGCCCGCTATGCGCCACGCCTACCAGCAAAGCCGCCATGCCCTTGCCTTGCTTGAAGGTTCAA
CTCCCGACAACGCCACCCTACCAACCTTTACGCTTGCGGAATTCCAGCTTCCCGCAACACTATCCATGCGCATTCCATCA
CAATTTGTGCGCTATCGCCCCGACATTCAAGCGGCTGAAGCCTTAATGATGGCAGCAAATGCCGAGTATGGGGCTGCCGC
TGCAAAAGCTTATCCTCAACTTACACTTTCAGCCTCGCTTGGCTCACAAGCCCTTACCACAGCCGCACTTTTTGGCAGCG
GTACCGCCGTGTGGAGCGTTGCGGGGCAGCTTGTGCAACCGCTCTTTAACCCATCACTTGGGGATGAAAAAAAAGCCGCC
AACGCCGCCTTTGAAGCCGCTACGGCACACTACCGCCAAAGCATTCTTGCGGGACTTCGTGATGTTGCCGACCTGCTTTC
AGCGCTTTATAACAATGCCATCGCACTTGCCGCCTTAGCCTCAGGTGCAGCTTTCGCCGATGAGCAAGTTGCCCTTACGG
AGCAACGCTACAAGTTAGGGGCAGCCTCGTACCTTGAGGTGGTGCAAGCACAAAGCGAAGCCACACAGCTTCAGCTTGAG
CTGCTTGCTGCCCGCGCCCAACGCTTATCAAATAGCGCAGTGCTTTATCAAGCTATGGGTGGGGGTGAAATGCTTTCGCC
GTCGGGAAGGGAGTAA

Upstream 100 bases:

>100_bases
CGCACGCACGAAGAAGTTGGAGAAGGGAAGTTGCCTCACGATTTATTGCAAGCACAACGGTAGTTGTAATGATGAATGAT
AAGTGATTGATGATAAATAA

Downstream 100 bases:

>100_bases
GTTATGGGATGAGTTGGTTATATTTTGTTCCATAAAGGATAACTCCGTATATCTGTAATTGTGGGTGGAACTTTATCGCC
CCATAACCTTTCTTAAAAAA

Product: RND efflux system outer membrane lipoprotein NodT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 511; Mature: 511

Protein sequence:

>511_residues
MMLFPRKRESRKILMVGLSTTKRVRTKIIMKKIIWLALPTAIVLAGCSSSHTLQSPTIALNDRYQQNSAHPQLTEAEGQQ
QQLVVESVAARWWEAFGSPKLNRLIEQSLKQNPTLAAAEATLRQAEALANAKYNSTLYPRLDAVGSAQRLQLNNSRNGVE
GGEKRFNLYNGSLSSSYNFDLSGANNRQLDALQAKANYQHYQLAGARLRLATEVAVTAIRQAQLGAQMEALERLIALGNE
QLTINRERLRLGAIASHELLEVERMVAEQRAALPAMRHAYQQSRHALALLEGSTPDNATLPTFTLAEFQLPATLSMRIPS
QFVRYRPDIQAAEALMMAANAEYGAAAAKAYPQLTLSASLGSQALTTAALFGSGTAVWSVAGQLVQPLFNPSLGDEKKAA
NAAFEAATAHYRQSILAGLRDVADLLSALYNNAIALAALASGAAFADEQVALTEQRYKLGAASYLEVVQAQSEATQLQLE
LLAARAQRLSNSAVLYQAMGGGEMLSPSGRE

Sequences:

>Translated_511_residues
MMLFPRKRESRKILMVGLSTTKRVRTKIIMKKIIWLALPTAIVLAGCSSSHTLQSPTIALNDRYQQNSAHPQLTEAEGQQ
QQLVVESVAARWWEAFGSPKLNRLIEQSLKQNPTLAAAEATLRQAEALANAKYNSTLYPRLDAVGSAQRLQLNNSRNGVE
GGEKRFNLYNGSLSSSYNFDLSGANNRQLDALQAKANYQHYQLAGARLRLATEVAVTAIRQAQLGAQMEALERLIALGNE
QLTINRERLRLGAIASHELLEVERMVAEQRAALPAMRHAYQQSRHALALLEGSTPDNATLPTFTLAEFQLPATLSMRIPS
QFVRYRPDIQAAEALMMAANAEYGAAAAKAYPQLTLSASLGSQALTTAALFGSGTAVWSVAGQLVQPLFNPSLGDEKKAA
NAAFEAATAHYRQSILAGLRDVADLLSALYNNAIALAALASGAAFADEQVALTEQRYKLGAASYLEVVQAQSEATQLQLE
LLAARAQRLSNSAVLYQAMGGGEMLSPSGRE
>Mature_511_residues
MMLFPRKRESRKILMVGLSTTKRVRTKIIMKKIIWLALPTAIVLAGCSSSHTLQSPTIALNDRYQQNSAHPQLTEAEGQQ
QQLVVESVAARWWEAFGSPKLNRLIEQSLKQNPTLAAAEATLRQAEALANAKYNSTLYPRLDAVGSAQRLQLNNSRNGVE
GGEKRFNLYNGSLSSSYNFDLSGANNRQLDALQAKANYQHYQLAGARLRLATEVAVTAIRQAQLGAQMEALERLIALGNE
QLTINRERLRLGAIASHELLEVERMVAEQRAALPAMRHAYQQSRHALALLEGSTPDNATLPTFTLAEFQLPATLSMRIPS
QFVRYRPDIQAAEALMMAANAEYGAAAAKAYPQLTLSASLGSQALTTAALFGSGTAVWSVAGQLVQPLFNPSLGDEKKAA
NAAFEAATAHYRQSILAGLRDVADLLSALYNNAIALAALASGAAFADEQVALTEQRYKLGAASYLEVVQAQSEATQLQLE
LLAARAQRLSNSAVLYQAMGGGEMLSPSGRE

Specific function: The outer membrane component of an organic solvent efflux pump. Involved in export of a number of low log POW compounds including hexane (log POW 3.5), toluene (log POW 2.5) and dimethylphthalate (log POW 2.3). The solvent resistance phenotype has been po

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=485, Percent_Identity=26.1855670103093, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI2367348, Length=455, Percent_Identity=24.1758241758242, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 55348; Mature: 55348

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLFPRKRESRKILMVGLSTTKRVRTKIIMKKIIWLALPTAIVLAGCSSSHTLQSPTIAL
CCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
NDRYQQNSAHPQLTEAEGQQQQLVVESVAARWWEAFGSPKLNRLIEQSLKQNPTLAAAEA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHH
TLRQAEALANAKYNSTLYPRLDAVGSAQRLQLNNSRNGVEGGEKRFNLYNGSLSSSYNFD
HHHHHHHHHCCCCCCCCCCCHHCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCEE
LSGANNRQLDALQAKANYQHYQLAGARLRLATEVAVTAIRQAQLGAQMEALERLIALGNE
ECCCCCCCHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
QLTINRERLRLGAIASHELLEVERMVAEQRAALPAMRHAYQQSRHALALLEGSTPDNATL
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
PTFTLAEFQLPATLSMRIPSQFVRYRPDIQAAEALMMAANAEYGAAAAKAYPQLTLSASL
CEEEEEEEECCCEEEECCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHCCCEEEEHHC
GSQALTTAALFGSGTAVWSVAGQLVQPLFNPSLGDEKKAANAAFEAATAHYRQSILAGLR
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DVADLLSALYNNAIALAALASGAAFADEQVALTEQRYKLGAASYLEVVQAQSEATQLQLE
HHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAARAQRLSNSAVLYQAMGGGEMLSPSGRE
HHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MMLFPRKRESRKILMVGLSTTKRVRTKIIMKKIIWLALPTAIVLAGCSSSHTLQSPTIAL
CCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
NDRYQQNSAHPQLTEAEGQQQQLVVESVAARWWEAFGSPKLNRLIEQSLKQNPTLAAAEA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHH
TLRQAEALANAKYNSTLYPRLDAVGSAQRLQLNNSRNGVEGGEKRFNLYNGSLSSSYNFD
HHHHHHHHHCCCCCCCCCCCHHCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCEE
LSGANNRQLDALQAKANYQHYQLAGARLRLATEVAVTAIRQAQLGAQMEALERLIALGNE
ECCCCCCCHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
QLTINRERLRLGAIASHELLEVERMVAEQRAALPAMRHAYQQSRHALALLEGSTPDNATL
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
PTFTLAEFQLPATLSMRIPSQFVRYRPDIQAAEALMMAANAEYGAAAAKAYPQLTLSASL
CEEEEEEEECCCEEEECCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHCCCEEEEHHC
GSQALTTAALFGSGTAVWSVAGQLVQPLFNPSLGDEKKAANAAFEAATAHYRQSILAGLR
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DVADLLSALYNNAIALAALASGAAFADEQVALTEQRYKLGAASYLEVVQAQSEATQLQLE
HHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAARAQRLSNSAVLYQAMGGGEMLSPSGRE
HHHHHHHHCCCCEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9417051; 9852029 [H]