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The map label for this gene is ihfB [H]

Identifier: 78188818

GI number: 78188818

Start: 1179976

End: 1180284

Strand: Reverse

Name: ihfB [H]

Synonym: Cag_0848

Alternate gene names: 78188818

Gene position: 1180284-1179976 (Counterclockwise)

Preceding gene: 78188819

Following gene: 78188817

Centisome position: 45.89

GC content: 40.45

Gene sequence:

>309_bases
ATGGGAAACACAACCACAAAAATTGATTTAGTTACCACCATTGCCCGCAACACAGGTTTAACAAAATATGAAACCGAAGC
GGTGGTAAATTGCTTGTTTGAAAGCATTATTGAGTCGCTGAAGGCGGGACGTCGTATTGAAATTCGAGGGTTTGGCTCCT
TTAATATTCGTCAAAAAAATGTGCGCAAAGCACGTAACCCTCGCACGGGTGAAAAGGTGATGGTTGAATCAAAACAGGTT
CCATCCTTTAAAATTTCTCGTGAATTTAAATTAGCCGTAAGCGAAAGCTTGAAAAGCAGTGAACTCTAA

Upstream 100 bases:

>100_bases
TCATGCTCGAAAGGTTTCTTTCTTTTGGTTTTTTTGGATAATTGTATTCTCTCTCTCTGTGATGCAATTATCATTTTTCC
CTACTTAAACGTTTACTGTT

Downstream 100 bases:

>100_bases
TGAGCGTTCAGGATGGGCAAGAATCCTACTATTATTCCCCCAAAGAGCGACTAAGTGGCGCGGTTGAAAGGGTAACCTTT
CATAGCCAAAAAAATGGCTT

Product: histone-like DNA-binding protein

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 102; Mature: 101

Protein sequence:

>102_residues
MGNTTTKIDLVTTIARNTGLTKYETEAVVNCLFESIIESLKAGRRIEIRGFGSFNIRQKNVRKARNPRTGEKVMVESKQV
PSFKISREFKLAVSESLKSSEL

Sequences:

>Translated_102_residues
MGNTTTKIDLVTTIARNTGLTKYETEAVVNCLFESIIESLKAGRRIEIRGFGSFNIRQKNVRKARNPRTGEKVMVESKQV
PSFKISREFKLAVSESLKSSEL
>Mature_101_residues
GNTTTKIDLVTTIARNTGLTKYETEAVVNCLFESIIESLKAGRRIEIRGFGSFNIRQKNVRKARNPRTGEKVMVESKQVP
SFKISREFKLAVSESLKSSEL

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=86, Percent_Identity=39.5348837209302, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1786644, Length=87, Percent_Identity=32.183908045977, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1788005, Length=96, Percent_Identity=31.25, Blast_Score=64, Evalue=1e-12,
Organism=Escherichia coli, GI1790433, Length=87, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11480; Mature: 11349

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNTTTKIDLVTTIARNTGLTKYETEAVVNCLFESIIESLKAGRRIEIRGFGSFNIRQKN
CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHH
VRKARNPRTGEKVMVESKQVPSFKISREFKLAVSESLKSSEL
HHHHCCCCCCCEEEEECCCCCCEECCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GNTTTKIDLVTTIARNTGLTKYETEAVVNCLFESIIESLKAGRRIEIRGFGSFNIRQKN
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHH
VRKARNPRTGEKVMVESKQVPSFKISREFKLAVSESLKSSEL
HHHHCCCCCCCEEEEECCCCCCEECCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA