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The map label for this gene is ctpA [H]

Identifier: 78188784

GI number: 78188784

Start: 1138419

End: 1140074

Strand: Reverse

Name: ctpA [H]

Synonym: Cag_0813

Alternate gene names: 78188784

Gene position: 1140074-1138419 (Counterclockwise)

Preceding gene: 78188785

Following gene: 78188783

Centisome position: 44.32

GC content: 45.83

Gene sequence:

>1656_bases
ATGTCCCGTATTGTTACTGTTGCCCTAATGCTTGTAGTGCTTTTGTTTGGGATTTTTCTTGGAACCCGAATAAGCGGTAG
GCGTGTTGAGAGTAGCGGTGCTGGTCAACAAAAAATTGTTGAGGCATATAATCTTATGCGGCAGTTTTATGTTGATGAGG
TGGGTGGTGATAGTTTAGCGGGGGCTGGCATTGAGGGTATGGCTGGATTGCTTGATCCCCATACGGTTTATTTGGAGCCT
GAAAAGGTTACTTATGAGCAGGCTGAGTTTGAAGGCAATTTTGATGGCATTGGTATTGAGTTTGATATTGTTAACGATAC
GCTGTTGGTGGTTACTCCGCTTTCGGGCGGACCAAGTGCGGCGGTAGGTTTGGCTTCGGGCGATAGAATTATTGGTATTG
ATGGCGTTTCGGCAATTGGTATTACCCAGCGTGATGTGTTGAAAAAGTTGCGTGGCAAGCAAGGTTCAATGGTTCAGCTT
GATGTGTTTCGTCCGCTTGATGGTAAGCGTATGGACTTTTCGGTAACGCGTGGCAAAATTTCCACGTCAAGCATTGAAGC
GGCGTTTATGGTGAACCAGCAGGTGGGGTATATTCGTTTAAGTCGTTTTATTGCGACAACGGCTGATGAGTTTCGTAGTT
CCCTTCAGCTTTTAAAACAGCAAGGCATGAAGCGCTTGCTGCTTGATATGCGTGGCAATCCCGGTGGTTTTCTTGAGCAA
GCCGTAGCCGTAGCCGATGAGTTTTTAAGCGAGGGCAAATTGATTGTTTATACAAAGAGCCGTAAGGGAAGTTTGCCTGA
TGAGCGTTACGAGGCTCGTTCGGGCGATACTTTTGAGCGAGGCGATGTGGTGGTGCTTATTGACCGTGGAAGCGCCTCAG
CGGCTGAAATTGTTGCTGGAGCGTTGCAAGATAATAAGCGGGCTGTGGTGGTTGGTGAGCCTTCGTTTGGCAAAGGGTTG
GTGCAGCAGCAATTACCCTTTGCGGATGGTTCGGCGTTACGCTTAACCGTTGCAAGGTACTACACACCTTCGGGGCGCCA
AATTCAGCGGGTTTATCGCAAAGGTGTGGCTGGTCGTGAGCACTATTTTGAAGAGAGTATGAGCAACATTTCACCCAACA
AACTTTTTGATGATCCTGATACCTTGCTTTATTATGAGAATAACAATGTGTCGGTTTACAACACCTCCACACTGCCATCA
TTATTGCTCTCGTTAAAAGGCAAAAAAGGTGAAAATAATCGTCTTACTGACTTGCGCGATGCTGGGGGTATTATTCCAAA
TTATTGGGTTAACGCAAGGAGTTATTCTTCATTTTATCAAGAGCTCTATCGCACAGGATTGTATGATGAAGTAGCTCGTA
AACTGCTTGATGATCCTCACTCGTTAGTGCAGAAGTATCGTGATTCGCTTGAGCGTTTTATGACAAGTTATACCGAAGAG
CCAAACTTTGAAGCCTTGCTTGCTAAAGCGTGCCAATCAAAAGGTGTTCGATTTAATCGTGTGGCGTTGCTGCAAGATCG
TCATGCCATTGTGTTGGCGCTTAAAGGACGCATGGCACACCAACTTTTTGGCTCAAGTGGTCAAATAAAATTTTATGTTA
AAACTGCTGATCCACTTGTTCGAGTGGCAACTTCAGTTCCGCTTTCAACTCGCTAA

Upstream 100 bases:

>100_bases
GGAGGGTGGATTTTTTGTCTTTCTGGTAATGGATAGGTAAACTCTACCTTTAAGGCGGCTTGTGCCGTTGTAGATTGCCA
CCATTTTTAACCTCTTATTT

Downstream 100 bases:

>100_bases
CCATTAGACACGCTACCCATTATGTCGCTCTTGGAAAAAATTCACGAAGCAACCTGTTCGGTTCGCTTTAGTAACGATTG
GTTAAAAATATTTACCTGCC

Product: peptidase S41A, C-terminal protease

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 551; Mature: 550

Protein sequence:

>551_residues
MSRIVTVALMLVVLLFGIFLGTRISGRRVESSGAGQQKIVEAYNLMRQFYVDEVGGDSLAGAGIEGMAGLLDPHTVYLEP
EKVTYEQAEFEGNFDGIGIEFDIVNDTLLVVTPLSGGPSAAVGLASGDRIIGIDGVSAIGITQRDVLKKLRGKQGSMVQL
DVFRPLDGKRMDFSVTRGKISTSSIEAAFMVNQQVGYIRLSRFIATTADEFRSSLQLLKQQGMKRLLLDMRGNPGGFLEQ
AVAVADEFLSEGKLIVYTKSRKGSLPDERYEARSGDTFERGDVVVLIDRGSASAAEIVAGALQDNKRAVVVGEPSFGKGL
VQQQLPFADGSALRLTVARYYTPSGRQIQRVYRKGVAGREHYFEESMSNISPNKLFDDPDTLLYYENNNVSVYNTSTLPS
LLLSLKGKKGENNRLTDLRDAGGIIPNYWVNARSYSSFYQELYRTGLYDEVARKLLDDPHSLVQKYRDSLERFMTSYTEE
PNFEALLAKACQSKGVRFNRVALLQDRHAIVLALKGRMAHQLFGSSGQIKFYVKTADPLVRVATSVPLSTR

Sequences:

>Translated_551_residues
MSRIVTVALMLVVLLFGIFLGTRISGRRVESSGAGQQKIVEAYNLMRQFYVDEVGGDSLAGAGIEGMAGLLDPHTVYLEP
EKVTYEQAEFEGNFDGIGIEFDIVNDTLLVVTPLSGGPSAAVGLASGDRIIGIDGVSAIGITQRDVLKKLRGKQGSMVQL
DVFRPLDGKRMDFSVTRGKISTSSIEAAFMVNQQVGYIRLSRFIATTADEFRSSLQLLKQQGMKRLLLDMRGNPGGFLEQ
AVAVADEFLSEGKLIVYTKSRKGSLPDERYEARSGDTFERGDVVVLIDRGSASAAEIVAGALQDNKRAVVVGEPSFGKGL
VQQQLPFADGSALRLTVARYYTPSGRQIQRVYRKGVAGREHYFEESMSNISPNKLFDDPDTLLYYENNNVSVYNTSTLPS
LLLSLKGKKGENNRLTDLRDAGGIIPNYWVNARSYSSFYQELYRTGLYDEVARKLLDDPHSLVQKYRDSLERFMTSYTEE
PNFEALLAKACQSKGVRFNRVALLQDRHAIVLALKGRMAHQLFGSSGQIKFYVKTADPLVRVATSVPLSTR
>Mature_550_residues
SRIVTVALMLVVLLFGIFLGTRISGRRVESSGAGQQKIVEAYNLMRQFYVDEVGGDSLAGAGIEGMAGLLDPHTVYLEPE
KVTYEQAEFEGNFDGIGIEFDIVNDTLLVVTPLSGGPSAAVGLASGDRIIGIDGVSAIGITQRDVLKKLRGKQGSMVQLD
VFRPLDGKRMDFSVTRGKISTSSIEAAFMVNQQVGYIRLSRFIATTADEFRSSLQLLKQQGMKRLLLDMRGNPGGFLEQA
VAVADEFLSEGKLIVYTKSRKGSLPDERYEARSGDTFERGDVVVLIDRGSASAAEIVAGALQDNKRAVVVGEPSFGKGLV
QQQLPFADGSALRLTVARYYTPSGRQIQRVYRKGVAGREHYFEESMSNISPNKLFDDPDTLLYYENNNVSVYNTSTLPSL
LLSLKGKKGENNRLTDLRDAGGIIPNYWVNARSYSSFYQELYRTGLYDEVARKLLDDPHSLVQKYRDSLERFMTSYTEEP
NFEALLAKACQSKGVRFNRVALLQDRHAIVLALKGRMAHQLFGSSGQIKFYVKTADPLVRVATSVPLSTR

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=317, Percent_Identity=31.8611987381703, Blast_Score=136, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 60748; Mature: 60617

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRIVTVALMLVVLLFGIFLGTRISGRRVESSGAGQQKIVEAYNLMRQFYVDEVGGDSLA
CCHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
GAGIEGMAGLLDPHTVYLEPEKVTYEQAEFEGNFDGIGIEFDIVNDTLLVVTPLSGGPSA
CCCCHHHHHCCCCCEEEECCCCCCHHHHHCCCCCCCEEEEEEEECCEEEEEEECCCCCCC
AVGLASGDRIIGIDGVSAIGITQRDVLKKLRGKQGSMVQLDVFRPLDGKRMDFSVTRGKI
EEEECCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEECCCC
STSSIEAAFMVNQQVGYIRLSRFIATTADEFRSSLQLLKQQGMKRLLLDMRGNPGGFLEQ
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHH
AVAVADEFLSEGKLIVYTKSRKGSLPDERYEARSGDTFERGDVVVLIDRGSASAAEIVAG
HHHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHH
ALQDNKRAVVVGEPSFGKGLVQQQLPFADGSALRLTVARYYTPSGRQIQRVYRKGVAGRE
HHCCCCEEEEECCCCCCCHHHHHCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHCCCCHH
HYFEESMSNISPNKLFDDPDTLLYYENNNVSVYNTSTLPSLLLSLKGKKGENNRLTDLRD
HHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEECCHHHHHHHHHCCCCCCCCCCCCHHH
AGGIIPNYWVNARSYSSFYQELYRTGLYDEVARKLLDDPHSLVQKYRDSLERFMTSYTEE
CCCCCCCCEECCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
PNFEALLAKACQSKGVRFNRVALLQDRHAIVLALKGRMAHQLFGSSGQIKFYVKTADPLV
CCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCHH
RVATSVPLSTR
HHHHCCCCCCC
>Mature Secondary Structure 
SRIVTVALMLVVLLFGIFLGTRISGRRVESSGAGQQKIVEAYNLMRQFYVDEVGGDSLA
CHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
GAGIEGMAGLLDPHTVYLEPEKVTYEQAEFEGNFDGIGIEFDIVNDTLLVVTPLSGGPSA
CCCCHHHHHCCCCCEEEECCCCCCHHHHHCCCCCCCEEEEEEEECCEEEEEEECCCCCCC
AVGLASGDRIIGIDGVSAIGITQRDVLKKLRGKQGSMVQLDVFRPLDGKRMDFSVTRGKI
EEEECCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEECCCC
STSSIEAAFMVNQQVGYIRLSRFIATTADEFRSSLQLLKQQGMKRLLLDMRGNPGGFLEQ
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHH
AVAVADEFLSEGKLIVYTKSRKGSLPDERYEARSGDTFERGDVVVLIDRGSASAAEIVAG
HHHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHH
ALQDNKRAVVVGEPSFGKGLVQQQLPFADGSALRLTVARYYTPSGRQIQRVYRKGVAGRE
HHCCCCEEEEECCCCCCCHHHHHCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHCCCCHH
HYFEESMSNISPNKLFDDPDTLLYYENNNVSVYNTSTLPSLLLSLKGKKGENNRLTDLRD
HHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEECCHHHHHHHHHCCCCCCCCCCCCHHH
AGGIIPNYWVNARSYSSFYQELYRTGLYDEVARKLLDDPHSLVQKYRDSLERFMTSYTEE
CCCCCCCCEECCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
PNFEALLAKACQSKGVRFNRVALLQDRHAIVLALKGRMAHQLFGSSGQIKFYVKTADPLV
CCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCHH
RVATSVPLSTR
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]