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The map label for this gene is rimM

Identifier: 78188774

GI number: 78188774

Start: 1126793

End: 1127296

Strand: Reverse

Name: rimM

Synonym: Cag_0803

Alternate gene names: 78188774

Gene position: 1127296-1126793 (Counterclockwise)

Preceding gene: 78188775

Following gene: 78188773

Centisome position: 43.83

GC content: 38.89

Gene sequence:

>504_bases
GTGGAGCTTTTTTTAACAGGAAAAATCCTTAAACCGAGAGGTTTAAAAGGAGAAGTTAAAGTTGAGCTTATTACTGATTT
TCCTCACCATTTTGTAAAGCGTAAGCAGTTTTTTGTTGGAGTTTCTCCTTCATCAGTAGTATGTATGCAGGTTACCAAAG
CCGCTCTTCATGGCGGCTTTGCTTGGTTGTTCTTTGAGGGCATTGATACTTTTGAACAAGCAACTACTCTTGTTGGCTTT
TCTCTTTTTATTACCGAAGAAGAGTTAGCGCCCCAACCTGAAAATCATGTCTATCGGCATGAAATTGTTGGGATGCGTGT
TGTTGATGGCAATGGTAAGCTGTTTGGAACGGTTACAGATATTTTCAATATGCCTGCTCACGATGTGTATGAAGTGCAAG
TAGAAGGCAAAACTGTTTTGTTGCCAGCAATTGAAGCATTTGTAGAATCTTTTGAACTTGCAAGTAAAACCATTGTTATG
TCCCGTTGTTGGGAATTTCTTTAA

Upstream 100 bases:

>100_bases
TAAAAGCTCGTCGTCGTCGTGCAAAAAAAGAGGCTGAAGCGGCAAGCGCCTCTTCGGCTGAAGGCTAATTGTTTCCGATT
TGACTAAAGAGGTAAACGTA

Downstream 100 bases:

>100_bases
AAAAGAGAAAGCTACTTGAGCTAAGTTAGTTATGCGTTTTGATGTAATTTCTGTTATCCCATATTTTTTTGATTCAGTGT
TAACAAGTGGTTTGCTTAAC

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MELFLTGKILKPRGLKGEVKVELITDFPHHFVKRKQFFVGVSPSSVVCMQVTKAALHGGFAWLFFEGIDTFEQATTLVGF
SLFITEEELAPQPENHVYRHEIVGMRVVDGNGKLFGTVTDIFNMPAHDVYEVQVEGKTVLLPAIEAFVESFELASKTIVM
SRCWEFL

Sequences:

>Translated_167_residues
MELFLTGKILKPRGLKGEVKVELITDFPHHFVKRKQFFVGVSPSSVVCMQVTKAALHGGFAWLFFEGIDTFEQATTLVGF
SLFITEEELAPQPENHVYRHEIVGMRVVDGNGKLFGTVTDIFNMPAHDVYEVQVEGKTVLLPAIEAFVESFELASKTIVM
SRCWEFL
>Mature_167_residues
MELFLTGKILKPRGLKGEVKVELITDFPHHFVKRKQFFVGVSPSSVVCMQVTKAALHGGFAWLFFEGIDTFEQATTLVGF
SLFITEEELAPQPENHVYRHEIVGMRVVDGNGKLFGTVTDIFNMPAHDVYEVQVEGKTVLLPAIEAFVESFELASKTIVM
SRCWEFL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_CHLCH (Q3ASF6)

Other databases:

- EMBL:   CP000108
- RefSeq:   YP_379112.1
- ProteinModelPortal:   Q3ASF6
- SMR:   Q3ASF6
- STRING:   Q3ASF6
- GeneID:   3747457
- GenomeReviews:   CP000108_GR
- KEGG:   cch:Cag_0803
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   FAWLFFE
- ProtClustDB:   CLSK637625
- BioCyc:   CCHL340177:CAG_0803-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18812; Mature: 18812

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFLTGKILKPRGLKGEVKVELITDFPHHFVKRKQFFVGVSPSSVVCMQVTKAALHGGF
CEEEEECEEECCCCCCCEEEEEEEECCHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCE
AWLFFEGIDTFEQATTLVGFSLFITEEELAPQPENHVYRHEIVGMRVVDGNGKLFGTVTD
EEEEEECCHHHHHHHHHHEEEEEEECHHHCCCCCCCEEEEEEEEEEEECCCCEEEEEHHH
IFNMPAHDVYEVQVEGKTVLLPAIEAFVESFELASKTIVMSRCWEFL
HHCCCCCCEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MELFLTGKILKPRGLKGEVKVELITDFPHHFVKRKQFFVGVSPSSVVCMQVTKAALHGGF
CEEEEECEEECCCCCCCEEEEEEEECCHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCE
AWLFFEGIDTFEQATTLVGFSLFITEEELAPQPENHVYRHEIVGMRVVDGNGKLFGTVTD
EEEEEECCHHHHHHHHHHEEEEEEECHHHCCCCCCCEEEEEEEEEEEECCCCEEEEEHHH
IFNMPAHDVYEVQVEGKTVLLPAIEAFVESFELASKTIVMSRCWEFL
HHCCCCCCEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA