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The map label for this gene is nlpC [H]

Identifier: 78188762

GI number: 78188762

Start: 1111663

End: 1112328

Strand: Reverse

Name: nlpC [H]

Synonym: Cag_0791

Alternate gene names: 78188762

Gene position: 1112328-1111663 (Counterclockwise)

Preceding gene: 78188766

Following gene: 78188761

Centisome position: 43.25

GC content: 43.09

Gene sequence:

>666_bases
ATGTCTCAGAAAACTATTTGCCCATCCACTCATTGGATGGGTTGCCCGTATTCGCTATGGCAACGCTTCTCCCGTGCCGT
TGCTGCTCTTGCTACCCTTTCTACACTCTCTTGTATTGCTCCCTCCTCAATTGTGTTGGCAAACCCTATTGCACCACCAC
AAAGCACTGCGGTTGATGTTGTAGCTGAAAATCCATCTACCCCAATAGCATTAGACCCCCCAACCCCGTCAAAATTAGAG
CAACTCATGGGTAATATGGGGAACTATTTTGGGATTCGTTATCGCTTTGGTGGTCAAACACCTGCTGGTTTTGATTGCTC
GGGTTTTGTGCGATACATGTTTGAAAAGGTTTACAACATCAAGCTTCCTCACTCTTCACGCGAAATGTCATCACTTGGTG
ATAGAATTAGTCGTGAGGAATTAAAGCCTGGCGATTTAGTTTTTTTTCATTCAGGTAAAAATCGGATTAACCACGTTGGT
ATTTACATTGGTAACGATGCCTTTATTCACTCCTCTCTTTCTAAAGGCATTACTGAAGACAAGCTACAACATCGTTACTA
CGATAAACGTTATGCTGGTGCTGTAAGAATTTTACCCGATATTACTCTTCCCTTCTCTACGCCTCGCCAAGAGGATGCAC
AACTTGAAATAATAAAGCCGTCATAA

Upstream 100 bases:

>100_bases
AATAAACAAATTATCGCACAAATCGTTGGGAGATGTAACGCTATCTGTTTACATTACAAGCAATTGAGACTATAAAAAAT
TTAACCTCTTGCGCTGCGTA

Downstream 100 bases:

>100_bases
GAGAATTTTTGTTTGCTGTTGCGGCATTAGTAACTTAGCGTGTTGCTTTTAATTTTGTTTCACTTTTCTAATTAAATGAG
AGAAATAATTATGAATAAGA

Product: cell wall-associated hydrolase (invasion-associated proteins)-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MSQKTICPSTHWMGCPYSLWQRFSRAVAALATLSTLSCIAPSSIVLANPIAPPQSTAVDVVAENPSTPIALDPPTPSKLE
QLMGNMGNYFGIRYRFGGQTPAGFDCSGFVRYMFEKVYNIKLPHSSREMSSLGDRISREELKPGDLVFFHSGKNRINHVG
IYIGNDAFIHSSLSKGITEDKLQHRYYDKRYAGAVRILPDITLPFSTPRQEDAQLEIIKPS

Sequences:

>Translated_221_residues
MSQKTICPSTHWMGCPYSLWQRFSRAVAALATLSTLSCIAPSSIVLANPIAPPQSTAVDVVAENPSTPIALDPPTPSKLE
QLMGNMGNYFGIRYRFGGQTPAGFDCSGFVRYMFEKVYNIKLPHSSREMSSLGDRISREELKPGDLVFFHSGKNRINHVG
IYIGNDAFIHSSLSKGITEDKLQHRYYDKRYAGAVRILPDITLPFSTPRQEDAQLEIIKPS
>Mature_220_residues
SQKTICPSTHWMGCPYSLWQRFSRAVAALATLSTLSCIAPSSIVLANPIAPPQSTAVDVVAENPSTPIALDPPTPSKLEQ
LMGNMGNYFGIRYRFGGQTPAGFDCSGFVRYMFEKVYNIKLPHSSREMSSLGDRISREELKPGDLVFFHSGKNRINHVGI
YIGNDAFIHSSLSKGITEDKLQHRYYDKRYAGAVRILPDITLPFSTPRQEDAQLEIIKPS

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788501, Length=118, Percent_Identity=42.3728813559322, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI1788001, Length=117, Percent_Identity=41.025641025641, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787944, Length=126, Percent_Identity=40.4761904761905, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1786421, Length=131, Percent_Identity=34.3511450381679, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 24540; Mature: 24409

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQKTICPSTHWMGCPYSLWQRFSRAVAALATLSTLSCIAPSSIVLANPIAPPQSTAVDV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEE
VAENPSTPIALDPPTPSKLEQLMGNMGNYFGIRYRFGGQTPAGFDCSGFVRYMFEKVYNI
EECCCCCCEEECCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHEE
KLPHSSREMSSLGDRISREELKPGDLVFFHSGKNRINHVGIYIGNDAFIHSSLSKGITED
ECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEECCCHHHHHHHHCCCCHH
KLQHRYYDKRYAGAVRILPDITLPFSTPRQEDAQLEIIKPS
HHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEEEECCC
>Mature Secondary Structure 
SQKTICPSTHWMGCPYSLWQRFSRAVAALATLSTLSCIAPSSIVLANPIAPPQSTAVDV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEE
VAENPSTPIALDPPTPSKLEQLMGNMGNYFGIRYRFGGQTPAGFDCSGFVRYMFEKVYNI
EECCCCCCEEECCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHEE
KLPHSSREMSSLGDRISREELKPGDLVFFHSGKNRINHVGIYIGNDAFIHSSLSKGITED
ECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEECCCHHHHHHHHCCCCHH
KLQHRYYDKRYAGAVRILPDITLPFSTPRQEDAQLEIIKPS
HHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]