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The map label for this gene is yvrC [H]

Identifier: 78188702

GI number: 78188702

Start: 1002356

End: 1003270

Strand: Reverse

Name: yvrC [H]

Synonym: Cag_0726

Alternate gene names: 78188702

Gene position: 1003270-1002356 (Counterclockwise)

Preceding gene: 78188703

Following gene: 78188701

Centisome position: 39.01

GC content: 50.71

Gene sequence:

>915_bases
ATGCCGAAGCCATTCACTCATAACATTCGTATGCTCTCGCTCGTTGCTACATGGCTTGTGCTAATGCTTAGCGTTGTAGG
GTGCCAACCGAAAGCAACAGACGAAAACACCCTTGCCTCTTCAGCCCAATCCTCTGCTAAACCACGCATTGTGAGCCTTG
CCCCCAGCGTAACCGAAATGCTCTACGCTATTGGTGCTGGTGAACAACTTGTCGGGCGAACCAGTGCCTGCGACTTCCCC
GCTGAAGCTGAAAAAGTGCCCGTAGCAGGCGCCTTTGGCAAACCATCGCTCGAAATGCTTGCCTCCATGCACCCCGATAT
GGTGATTGCGGTGGACTTAGAGGATAAGCGCAATAGCGACAAAATTCGGGAACTCGGCATTCGCATGGAGCACATTACCT
GCACCACACCCGATGAAATTCCCGAAGCCTTACGCACACTTGGACGCTTAACGAAAAATGAGCGCCAAGCCGATAGCCTT
GCTTCCGTTATTAGCAAAGGTTTAGCGGAGTTCCGCAAGCAGGCACCGCCTACGGCACAACGCCCAACCATCTATCTTGA
ACTATGGGATGACCCATTTTGGACAGGCGGAAAAACAAGTTACACCTCAGCGCTGATTGCAACGGCTGGAGGACGCAACA
TTGGCGACGTGGTGGAAAAGGATTATTTTGAAATATCACAAGAGTGGGTCATTCAGCAAAATCCCGACGTCATTGCCTGC
ATGTACATGGCTCGCAACTCCTCAGCCACCGATAAAGTTAAAGAGCGTGCGGGATGGAACACCATTAAAGCCGTGCAGCA
AAAGCGCGTTTATGACCGTTTTGATAACAGCTTATTTTTGCGCCCCGGACCTCGCGTGCTTGAAGGAATTGCCGAAATGC
ACAAAACACTCTATCCTGTAAATGTTGGCAAATAA

Upstream 100 bases:

>100_bases
GCGCTTATGCCCGATGAAGTTACTGAAATTGCATGGTTCCCGCTTCGCGAAGCCTTAACCTTGCCACTTGCTTTTAACCA
CACCCAAATTTTGCAGCACT

Downstream 100 bases:

>100_bases
GATACTCCTTCCTTTTCTTGCCTTCCTCTCTAAACATTTTTTTATCTTGACGCCATTACTGCCATAGCCTCCATATTTGC
AAGTTATTGCAATGGAGGCA

Product: ABC transporter, periplasmic substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MPKPFTHNIRMLSLVATWLVLMLSVVGCQPKATDENTLASSAQSSAKPRIVSLAPSVTEMLYAIGAGEQLVGRTSACDFP
AEAEKVPVAGAFGKPSLEMLASMHPDMVIAVDLEDKRNSDKIRELGIRMEHITCTTPDEIPEALRTLGRLTKNERQADSL
ASVISKGLAEFRKQAPPTAQRPTIYLELWDDPFWTGGKTSYTSALIATAGGRNIGDVVEKDYFEISQEWVIQQNPDVIAC
MYMARNSSATDKVKERAGWNTIKAVQQKRVYDRFDNSLFLRPGPRVLEGIAEMHKTLYPVNVGK

Sequences:

>Translated_304_residues
MPKPFTHNIRMLSLVATWLVLMLSVVGCQPKATDENTLASSAQSSAKPRIVSLAPSVTEMLYAIGAGEQLVGRTSACDFP
AEAEKVPVAGAFGKPSLEMLASMHPDMVIAVDLEDKRNSDKIRELGIRMEHITCTTPDEIPEALRTLGRLTKNERQADSL
ASVISKGLAEFRKQAPPTAQRPTIYLELWDDPFWTGGKTSYTSALIATAGGRNIGDVVEKDYFEISQEWVIQQNPDVIAC
MYMARNSSATDKVKERAGWNTIKAVQQKRVYDRFDNSLFLRPGPRVLEGIAEMHKTLYPVNVGK
>Mature_303_residues
PKPFTHNIRMLSLVATWLVLMLSVVGCQPKATDENTLASSAQSSAKPRIVSLAPSVTEMLYAIGAGEQLVGRTSACDFPA
EAEKVPVAGAFGKPSLEMLASMHPDMVIAVDLEDKRNSDKIRELGIRMEHITCTTPDEIPEALRTLGRLTKNERQADSLA
SVISKGLAEFRKQAPPTAQRPTIYLELWDDPFWTGGKTSYTSALIATAGGRNIGDVVEKDYFEISQEWVIQQNPDVIACM
YMARNSSATDKVKERAGWNTIKAVQQKRVYDRFDNSLFLRPGPRVLEGIAEMHKTLYPVNVGK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=197, Percent_Identity=28.4263959390863, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 33555; Mature: 33424

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKPFTHNIRMLSLVATWLVLMLSVVGCQPKATDENTLASSAQSSAKPRIVSLAPSVTEM
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEECHHHHHH
LYAIGAGEQLVGRTSACDFPAEAEKVPVAGAFGKPSLEMLASMHPDMVIAVDLEDKRNSD
HHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCHH
KIRELGIRMEHITCTTPDEIPEALRTLGRLTKNERQADSLASVISKGLAEFRKQAPPTAQ
HHHHHCCEEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
RPTIYLELWDDPFWTGGKTSYTSALIATAGGRNIGDVVEKDYFEISQEWVIQQNPDVIAC
CCEEEEEECCCCCCCCCCHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
MYMARNSSATDKVKERAGWNTIKAVQQKRVYDRFDNSLFLRPGPRVLEGIAEMHKTLYPV
EEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHCCCC
NVGK
CCCC
>Mature Secondary Structure 
PKPFTHNIRMLSLVATWLVLMLSVVGCQPKATDENTLASSAQSSAKPRIVSLAPSVTEM
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEECHHHHHH
LYAIGAGEQLVGRTSACDFPAEAEKVPVAGAFGKPSLEMLASMHPDMVIAVDLEDKRNSD
HHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCHH
KIRELGIRMEHITCTTPDEIPEALRTLGRLTKNERQADSLASVISKGLAEFRKQAPPTAQ
HHHHHCCEEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
RPTIYLELWDDPFWTGGKTSYTSALIATAGGRNIGDVVEKDYFEISQEWVIQQNPDVIAC
CCEEEEEECCCCCCCCCCHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
MYMARNSSATDKVKERAGWNTIKAVQQKRVYDRFDNSLFLRPGPRVLEGIAEMHKTLYPV
EEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHCCCC
NVGK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]