| Definition | Chlorobium chlorochromatii CaD3 chromosome, complete genome. |
|---|---|
| Accession | NC_007514 |
| Length | 2,572,079 |
Click here to switch to the map view.
The map label for this gene is uvrA [H]
Identifier: 78188137
GI number: 78188137
Start: 171329
End: 174184
Strand: Reverse
Name: uvrA [H]
Synonym: Cag_0154
Alternate gene names: 78188137
Gene position: 174184-171329 (Counterclockwise)
Preceding gene: 78188138
Following gene: 78188130
Centisome position: 6.77
GC content: 48.95
Gene sequence:
>2856_bases ATGTCATTCAGCCACATTAGCATACGAGGCGCCCGCGTTCATAACCTCAAGAACATTTCGCTTGATATTCCCCGCAACCA ATTTGTGGTTATTACAGGGCTTTCAGGTTCAGGAAAATCGAGTCTTGCTTTCGACACCATTTATGCCGAAGGGCAGCGCC GCTTTATGGAAACGCTCTCCCCTTATGCACGCCAATATATTGGCAACATTGAGCGCCCTGATGTGGATTTTATTGAAGGA CTGTCGCCCGTTATTGCTATTGATCAAAAAAGTACCAGCCGCTCCCCTCGCTCAACGGTTGGCACTATTACCGAAATCCA CGACTTTATTCGGTTGCTGTATGCAAAAGCGGGACGCCGTTACAATCCCGAAACGGGTGCCATGGTGCAAGCACAAAGCG CCGACAACATTCTTGCAACCATTCTTGCCCTACCCGAAGGAAGCAAGGTGCAAATTCTTTCACCACTTGTTACAGGGCGA AAAGGGCATTATCGGGAGCTATTTGAGCGCTTACGCAGCAAAGGCTTTTTGCGGGTGCGTGTTGATGGCGAATTGCAAGA AATGGTGCCCAACATGCAGCTTGAGCGTTACAAAAGCCACACCATTGAGTTGGTGGTTGATCGGCTTGTTCTTGCGCCTG AAAGCGAAGCACGAGTGCGCGAAGCCGTCATGCTGGCTATTAGTATCTCGGAGCACAAGTCGTCGGTTATTTGCACGCCC TTTGAGGGTGGCTTTACCGAGCTTGCTTTTACGCTCAGCAAAGGGGATAATGAGGATGCCCTGCCAACATCAACCTTGGC ACCGAACCACTTTAGCTTTAATTCCCCTTATGGCGCTTGCCCAACCTGTAACGGATTGGGTGAATTGATGCAGCTTTCGG GTGAATTGATGATTCCCGATCCTTCGCTGTCGCTCAATCAAGGTGGGCTTGACCCTTTTGGAAAAGCTGGCAAACGCAAC CATTGGCAGGTAATTCGCGCTATTGCAAAAGAGTTCGATTTTACGCTCGATACTCCCATGAGCAAAATTCCCAAAAGCGC ACTTAAAATATTGCTCAATGGCTCAGGCAAGCGCACCTTTGAGGTAGCTTACACCTCTTCAGGACACACCAGCTTATATC CACAGCCTTTTCAAGGTGCCGTAGCATATGTGCAAGAAATTCTCAATAACGCCACAACCTCGAAAGTGCGGGAGTGGGCT GAAGCCTACATGCTCCACCAACCCTGCCCCGTATGCCTTGGCGCACGCTTAAAACCCGAAAGCTTGCAGGTTAAAATTCA TGGCTTAAACATTGCTGAACTCGAAGCTTTGCCACTACCTGAAACCCTTGCCTTTTTTAATAATCTACCGCCCAATCTTA GCCAAAAAGAGTTGATAATTGCCACTCCCGTGTTGCATGAAATCACCAAACGGCTCCAATTTTTATTGGATGTTGGGTTA GGCTATCTCTCGCTTGACCGTAGCTCGCACACACTTTCGGGCGGCGAAGCACAGCGCATTCGGCTTGCCTCGCAGCTTGG CTCGCAACTGAGCGGCGTGCTCTATGTGCTTGACGAGCCGAGTATTGGATTGCATCAGCGCGACAACCACAAGCTCATTA CCTCATTGAAGCATTTGCGCGACCTTGGCAACACCGTGTTAGTGGTTGAGCACGATAAAGATACCATGCTGGAAGCTGAT ACCATTGTGGATCTTGGTCCGGGTGCGGGCGCTTACGGAGGCGAAATTGTGGCTTTTGGCGCAGCCCGTGAGCTTGACCC TTCGTCGCTAACGGCAGGCTACCTCAATGGCACCAACCGCGTTTTTTATGCAAGCGAAGCTTCATCCGAAAAAACTGATG CCGATGCCGATGCCACACCACTTTTTCTTACGCTGAAAGGATGTAAAGGCAACAATCTTAAAAACATTGACGCACAAATT CCGCTCCGCAAATTAGTAAGCATTACGGGTGTAAGTGGCTCAGGTAAATCAACCTTGATTAATGAAACCCTTTACCCAAT CCTTGCACGCCACTTCTACCGCTCAAAAGTAGTAACCGCACCATTCGACGCTATTGAAGGGATAGAGCTGCTTGACAAGG TGGTAAATGTTGACCAATCACCCATTGGACGCACACCGCGCTCCAATCCCGCAACCTACACGGGAGCCTTTACCTTTATT CGCGACTTCTTTACCCGCTTGCCCGAAGCGCAAATTCGTGGCTACAAAGCGGGACGTTTTAGCTTTAACGTAAAAGGGGG GCGCTGCGAAGTGTGCCAAGGCGCAGGCACGCGCAAAATTGAGATGAATTTTTTGCCCGACGTTTACGTGCAGTGCGAAA ATTGCAAAGGCGAACGCTACAACCGCGAAACGCTGATGGTAAAGTATCGCGGTAAATCCATTGCCGACGTATTGGAAATG AGCATTACCGAAGCCGCTGAATTTTTTACCGACTTCCCTCGCATTCGCCGCATTCTCAATACCATGCAAAGCGTTGGGCT TGGCTATCTCAAGCTGGGGCAACCCTCGCCCATGCTTTCAGGCGGCGAAGCACAACGCATTAAATTATCGGCAGAGTTGG CTAAAATTCAAACAGGCAAAACGCTCTATATTTTAGATGAACCAACCACGGGACTTCATTTTCAGGATACGCAACATTTG CTGGAAGTGCTCCGCAAATTAGTAGAGAAAGGCAATAGCGTCATTATTATTGAGCACAATCTCGATATTATTAAAAACAG CGACTGGGTTATTGATTTAGGAGCAGAAGGGGGATTTGAAGGGGGAACAATTATTGCAGAAGGCACACCTCAGCAAATTG CCGATACGCCTCATTCGCATACAGGTAGATTTTTAAAGATGGAGATGGGGGGTTAG
Upstream 100 bases:
>100_bases AACAGAGCTATCTCTCTAAAAGGTAATGGCATAGCAATACAATTATCGCCATGCTTTGGAGAGATACTTAGCCATACTGT ACTGTAGTAATAATTCCCTT
Downstream 100 bases:
>100_bases GTGCGTAATGCCTCATAACGGTTGCGTGTATGAAACGTTTGGCATTTCGAAGCGATTTCCTATCAAGTTACAAGTGCCTT TGATACGAGCTGAAACGATC
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 951; Mature: 950
Protein sequence:
>951_residues MSFSHISIRGARVHNLKNISLDIPRNQFVVITGLSGSGKSSLAFDTIYAEGQRRFMETLSPYARQYIGNIERPDVDFIEG LSPVIAIDQKSTSRSPRSTVGTITEIHDFIRLLYAKAGRRYNPETGAMVQAQSADNILATILALPEGSKVQILSPLVTGR KGHYRELFERLRSKGFLRVRVDGELQEMVPNMQLERYKSHTIELVVDRLVLAPESEARVREAVMLAISISEHKSSVICTP FEGGFTELAFTLSKGDNEDALPTSTLAPNHFSFNSPYGACPTCNGLGELMQLSGELMIPDPSLSLNQGGLDPFGKAGKRN HWQVIRAIAKEFDFTLDTPMSKIPKSALKILLNGSGKRTFEVAYTSSGHTSLYPQPFQGAVAYVQEILNNATTSKVREWA EAYMLHQPCPVCLGARLKPESLQVKIHGLNIAELEALPLPETLAFFNNLPPNLSQKELIIATPVLHEITKRLQFLLDVGL GYLSLDRSSHTLSGGEAQRIRLASQLGSQLSGVLYVLDEPSIGLHQRDNHKLITSLKHLRDLGNTVLVVEHDKDTMLEAD TIVDLGPGAGAYGGEIVAFGAARELDPSSLTAGYLNGTNRVFYASEASSEKTDADADATPLFLTLKGCKGNNLKNIDAQI PLRKLVSITGVSGSGKSTLINETLYPILARHFYRSKVVTAPFDAIEGIELLDKVVNVDQSPIGRTPRSNPATYTGAFTFI RDFFTRLPEAQIRGYKAGRFSFNVKGGRCEVCQGAGTRKIEMNFLPDVYVQCENCKGERYNRETLMVKYRGKSIADVLEM SITEAAEFFTDFPRIRRILNTMQSVGLGYLKLGQPSPMLSGGEAQRIKLSAELAKIQTGKTLYILDEPTTGLHFQDTQHL LEVLRKLVEKGNSVIIIEHNLDIIKNSDWVIDLGAEGGFEGGTIIAEGTPQQIADTPHSHTGRFLKMEMGG
Sequences:
>Translated_951_residues MSFSHISIRGARVHNLKNISLDIPRNQFVVITGLSGSGKSSLAFDTIYAEGQRRFMETLSPYARQYIGNIERPDVDFIEG LSPVIAIDQKSTSRSPRSTVGTITEIHDFIRLLYAKAGRRYNPETGAMVQAQSADNILATILALPEGSKVQILSPLVTGR KGHYRELFERLRSKGFLRVRVDGELQEMVPNMQLERYKSHTIELVVDRLVLAPESEARVREAVMLAISISEHKSSVICTP FEGGFTELAFTLSKGDNEDALPTSTLAPNHFSFNSPYGACPTCNGLGELMQLSGELMIPDPSLSLNQGGLDPFGKAGKRN HWQVIRAIAKEFDFTLDTPMSKIPKSALKILLNGSGKRTFEVAYTSSGHTSLYPQPFQGAVAYVQEILNNATTSKVREWA EAYMLHQPCPVCLGARLKPESLQVKIHGLNIAELEALPLPETLAFFNNLPPNLSQKELIIATPVLHEITKRLQFLLDVGL GYLSLDRSSHTLSGGEAQRIRLASQLGSQLSGVLYVLDEPSIGLHQRDNHKLITSLKHLRDLGNTVLVVEHDKDTMLEAD TIVDLGPGAGAYGGEIVAFGAARELDPSSLTAGYLNGTNRVFYASEASSEKTDADADATPLFLTLKGCKGNNLKNIDAQI PLRKLVSITGVSGSGKSTLINETLYPILARHFYRSKVVTAPFDAIEGIELLDKVVNVDQSPIGRTPRSNPATYTGAFTFI RDFFTRLPEAQIRGYKAGRFSFNVKGGRCEVCQGAGTRKIEMNFLPDVYVQCENCKGERYNRETLMVKYRGKSIADVLEM SITEAAEFFTDFPRIRRILNTMQSVGLGYLKLGQPSPMLSGGEAQRIKLSAELAKIQTGKTLYILDEPTTGLHFQDTQHL LEVLRKLVEKGNSVIIIEHNLDIIKNSDWVIDLGAEGGFEGGTIIAEGTPQQIADTPHSHTGRFLKMEMGG >Mature_950_residues SFSHISIRGARVHNLKNISLDIPRNQFVVITGLSGSGKSSLAFDTIYAEGQRRFMETLSPYARQYIGNIERPDVDFIEGL SPVIAIDQKSTSRSPRSTVGTITEIHDFIRLLYAKAGRRYNPETGAMVQAQSADNILATILALPEGSKVQILSPLVTGRK GHYRELFERLRSKGFLRVRVDGELQEMVPNMQLERYKSHTIELVVDRLVLAPESEARVREAVMLAISISEHKSSVICTPF EGGFTELAFTLSKGDNEDALPTSTLAPNHFSFNSPYGACPTCNGLGELMQLSGELMIPDPSLSLNQGGLDPFGKAGKRNH WQVIRAIAKEFDFTLDTPMSKIPKSALKILLNGSGKRTFEVAYTSSGHTSLYPQPFQGAVAYVQEILNNATTSKVREWAE AYMLHQPCPVCLGARLKPESLQVKIHGLNIAELEALPLPETLAFFNNLPPNLSQKELIIATPVLHEITKRLQFLLDVGLG YLSLDRSSHTLSGGEAQRIRLASQLGSQLSGVLYVLDEPSIGLHQRDNHKLITSLKHLRDLGNTVLVVEHDKDTMLEADT IVDLGPGAGAYGGEIVAFGAARELDPSSLTAGYLNGTNRVFYASEASSEKTDADADATPLFLTLKGCKGNNLKNIDAQIP LRKLVSITGVSGSGKSTLINETLYPILARHFYRSKVVTAPFDAIEGIELLDKVVNVDQSPIGRTPRSNPATYTGAFTFIR DFFTRLPEAQIRGYKAGRFSFNVKGGRCEVCQGAGTRKIEMNFLPDVYVQCENCKGERYNRETLMVKYRGKSIADVLEMS ITEAAEFFTDFPRIRRILNTMQSVGLGYLKLGQPSPMLSGGEAQRIKLSAELAKIQTGKTLYILDEPTTGLHFQDTQHLL EVLRKLVEKGNSVIIIEHNLDIIKNSDWVIDLGAEGGFEGGTIIAEGTPQQIADTPHSHTGRFLKMEMGG
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=947, Percent_Identity=48.9968321013728, Blast_Score=913, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 104537; Mature: 104406
Theoretical pI: Translated: 7.24; Mature: 7.24
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFSHISIRGARVHNLKNISLDIPRNQFVVITGLSGSGKSSLAFDTIYAEGQRRFMETLS CCCCEEEEECEEEECEEEEEEECCCCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHH PYARQYIGNIERPDVDFIEGLSPVIAIDQKSTSRSPRSTVGTITEIHDFIRLLYAKAGRR HHHHHHHCCCCCCCHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC YNPETGAMVQAQSADNILATILALPEGSKVQILSPLVTGRKGHYRELFERLRSKGFLRVR CCCCCCCEEEECCCCCCEEHHEECCCCCEEEEECHHHCCCCCHHHHHHHHHHHCCEEEEE VDGELQEMVPNMQLERYKSHTIELVVDRLVLAPESEARVREAVMLAISISEHKSSVICTP ECCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEECCCCCCEEEEC FEGGFTELAFTLSKGDNEDALPTSTLAPNHFSFNSPYGACPTCNGLGELMQLSGELMIPD CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECC PSLSLNQGGLDPFGKAGKRNHWQVIRAIAKEFDFTLDTPMSKIPKSALKILLNGSGKRTF CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCHHHHHEEECCCCCEEE EVAYTSSGHTSLYPQPFQGAVAYVQEILNNATTSKVREWAEAYMLHQPCPVCLGARLKPE EEEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCC SLQVKIHGLNIAELEALPLPETLAFFNNLPPNLSQKELIIATPVLHEITKRLQFLLDVGL EEEEEEECCCEEHEECCCCCHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCC GYLSLDRSSHTLSGGEAQRIRLASQLGSQLSGVLYVLDEPSIGLHQRDNHKLITSLKHLR CEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHH DLGNTVLVVEHDKDTMLEADTIVDLGPGAGAYGGEIVAFGAARELDPSSLTAGYLNGTNR HCCCEEEEEECCCCCEEECCCEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCE VFYASEASSEKTDADADATPLFLTLKGCKGNNLKNIDAQIPLRKLVSITGVSGSGKSTLI EEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHEEECCCCCCCCHHH NETLYPILARHFYRSKVVTAPFDAIEGIELLDKVVNVDQSPIGRTPRSNPATYTGAFTFI HHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHH RDFFTRLPEAQIRGYKAGRFSFNVKGGRCEVCQGAGTRKIEMNFLPDVYVQCENCKGERY HHHHHHCCHHHHCCEECCEEEEEECCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCC NRETLMVKYRGKSIADVLEMSITEAAEFFTDFPRIRRILNTMQSVGLGYLKLGQPSPMLS CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCCCCCCCC GGEAQRIKLSAELAKIQTGKTLYILDEPTTGLHFQDTQHLLEVLRKLVEKGNSVIIIEHN CCCCEEEEEEEHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC LDIIKNSDWVIDLGAEGGFEGGTIIAEGTPQQIADTPHSHTGRFLKMEMGG CEEEECCCEEEEECCCCCCCCCEEEECCCCHHHHCCCCCCCCCEEEEECCC >Mature Secondary Structure SFSHISIRGARVHNLKNISLDIPRNQFVVITGLSGSGKSSLAFDTIYAEGQRRFMETLS CCCEEEEECEEEECEEEEEEECCCCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHH PYARQYIGNIERPDVDFIEGLSPVIAIDQKSTSRSPRSTVGTITEIHDFIRLLYAKAGRR HHHHHHHCCCCCCCHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC YNPETGAMVQAQSADNILATILALPEGSKVQILSPLVTGRKGHYRELFERLRSKGFLRVR CCCCCCCEEEECCCCCCEEHHEECCCCCEEEEECHHHCCCCCHHHHHHHHHHHCCEEEEE VDGELQEMVPNMQLERYKSHTIELVVDRLVLAPESEARVREAVMLAISISEHKSSVICTP ECCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEECCCCCCEEEEC FEGGFTELAFTLSKGDNEDALPTSTLAPNHFSFNSPYGACPTCNGLGELMQLSGELMIPD CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECC PSLSLNQGGLDPFGKAGKRNHWQVIRAIAKEFDFTLDTPMSKIPKSALKILLNGSGKRTF CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCHHHHHEEECCCCCEEE EVAYTSSGHTSLYPQPFQGAVAYVQEILNNATTSKVREWAEAYMLHQPCPVCLGARLKPE EEEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCC SLQVKIHGLNIAELEALPLPETLAFFNNLPPNLSQKELIIATPVLHEITKRLQFLLDVGL EEEEEEECCCEEHEECCCCCHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCC GYLSLDRSSHTLSGGEAQRIRLASQLGSQLSGVLYVLDEPSIGLHQRDNHKLITSLKHLR CEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHH DLGNTVLVVEHDKDTMLEADTIVDLGPGAGAYGGEIVAFGAARELDPSSLTAGYLNGTNR HCCCEEEEEECCCCCEEECCCEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCE VFYASEASSEKTDADADATPLFLTLKGCKGNNLKNIDAQIPLRKLVSITGVSGSGKSTLI EEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHEEECCCCCCCCHHH NETLYPILARHFYRSKVVTAPFDAIEGIELLDKVVNVDQSPIGRTPRSNPATYTGAFTFI HHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHH RDFFTRLPEAQIRGYKAGRFSFNVKGGRCEVCQGAGTRKIEMNFLPDVYVQCENCKGERY HHHHHHCCHHHHCCEECCEEEEEECCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCC NRETLMVKYRGKSIADVLEMSITEAAEFFTDFPRIRRILNTMQSVGLGYLKLGQPSPMLS CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCCCCCCCC GGEAQRIKLSAELAKIQTGKTLYILDEPTTGLHFQDTQHLLEVLRKLVEKGNSVIIIEHN CCCCEEEEEEEHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC LDIIKNSDWVIDLGAEGGFEGGTIIAEGTPQQIADTPHSHTGRFLKMEMGG CEEEECCCEEEEECCCCCCCCCEEEECCCCHHHHCCCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8675016 [H]