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The map label for this gene is ydhC [H]

Identifier: 78067968

GI number: 78067968

Start: 3670644

End: 3671372

Strand: Reverse

Name: ydhC [H]

Synonym: Bcep18194_A6499

Alternate gene names: 78067968

Gene position: 3671372-3670644 (Counterclockwise)

Preceding gene: 78067969

Following gene: 78067962

Centisome position: 99.38

GC content: 68.04

Gene sequence:

>729_bases
ATGACAGCCCCGAACGCGCTCAGCGCCATCGAACTCCTGCAAAGCCAGTCGCTCGCGATGATCGTCCAGGACATGCTCGA
GCGCGCGATTGTCTCCGGCGAATACGCCCCTGGCGAGAAGCTCAACGAAGTCGAGATCGCGACCAAGCTGAACGTGTCGC
GCGGCCCCGTGCGCGAAGCATTCCGTGCGCTCGAACAGGCCGGCCTGCTGCGCAACGAGAAGAATCGCGGCGTGACGGTG
CGCGTCGTGCCGCTGCGCGAGGCCGAGGAGATCTACGAAGTGCGCGCGATGCTCGACGAGTCGGTCGCGCGCGCGCTCGC
GAAGCGCATCTCGCCCGACACGCTGAAGGTGCTGAAGGGCATCATCCAGTCGATGAAGGACGCCGCGAAGACGCACGACG
TCACGCGCTACACCGAGCTGAACGTGCAGTTCCACGACGCGATGGTCGTCGGCGTCGGCAATACGCACCTCACCGATACC
TACCGCCGGCTCGTGCGCCAGCTCGGCCTGCTGCGCCAGGCCGCGATCGAGGCCGAGGAGGATGCGATCGCCGTGTCCGC
CGCCGAGCACGACAAGATCGTACAGGCGCTCGCGGGCGGCGACGGGGAGCAGGCGGTGGCGCTCGTGCGCGAGCACCTCT
CGCACGGTCTCGAGCGCATGCGTCGCACGCACGAGCAGGGGCTGCCCTCGACGGGCAAGTCGACGCGGGAAAAGCCCGTG
CGCGCGTAA

Upstream 100 bases:

>100_bases
ACTGAAAACTGTTGACAATGTGTCGGGTCGAGGGTATATAAGGATCATTCGCCGATATGGCGCCCTCGTTTTCTACCGCA
GCCTTGCTGCCTGCCCGACC

Downstream 100 bases:

>100_bases
GCGCTCGGCAACGCTCGCGCGGGTTGCCGCGTACAGCACAAGGCACAAAGCAAAGGGACGCTTCGCAGCGTCCCTTTTTC
ATTGCGTCTTCAGGTCATGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MTAPNALSAIELLQSQSLAMIVQDMLERAIVSGEYAPGEKLNEVEIATKLNVSRGPVREAFRALEQAGLLRNEKNRGVTV
RVVPLREAEEIYEVRAMLDESVARALAKRISPDTLKVLKGIIQSMKDAAKTHDVTRYTELNVQFHDAMVVGVGNTHLTDT
YRRLVRQLGLLRQAAIEAEEDAIAVSAAEHDKIVQALAGGDGEQAVALVREHLSHGLERMRRTHEQGLPSTGKSTREKPV
RA

Sequences:

>Translated_242_residues
MTAPNALSAIELLQSQSLAMIVQDMLERAIVSGEYAPGEKLNEVEIATKLNVSRGPVREAFRALEQAGLLRNEKNRGVTV
RVVPLREAEEIYEVRAMLDESVARALAKRISPDTLKVLKGIIQSMKDAAKTHDVTRYTELNVQFHDAMVVGVGNTHLTDT
YRRLVRQLGLLRQAAIEAEEDAIAVSAAEHDKIVQALAGGDGEQAVALVREHLSHGLERMRRTHEQGLPSTGKSTREKPV
RA
>Mature_241_residues
TAPNALSAIELLQSQSLAMIVQDMLERAIVSGEYAPGEKLNEVEIATKLNVSRGPVREAFRALEQAGLLRNEKNRGVTVR
VVPLREAEEIYEVRAMLDESVARALAKRISPDTLKVLKGIIQSMKDAAKTHDVTRYTELNVQFHDAMVVGVGNTHLTDTY
RRLVRQLGLLRQAAIEAEEDAIAVSAAEHDKIVQALAGGDGEQAVALVREHLSHGLERMRRTHEQGLPSTGKSTREKPVR
A

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=209, Percent_Identity=26.7942583732057, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26642; Mature: 26511

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPNALSAIELLQSQSLAMIVQDMLERAIVSGEYAPGEKLNEVEIATKLNVSRGPVREA
CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCHHHHH
FRALEQAGLLRNEKNRGVTVRVVPLREAEEIYEVRAMLDESVARALAKRISPDTLKVLKG
HHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
IIQSMKDAAKTHDVTRYTELNVQFHDAMVVGVGNTHLTDTYRRLVRQLGLLRQAAIEAEE
HHHHHHHHHHHHHHHHHHEECEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCC
DAIAVSAAEHDKIVQALAGGDGEQAVALVREHLSHGLERMRRTHEQGLPSTGKSTREKPV
HHHEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
RA
CC
>Mature Secondary Structure 
TAPNALSAIELLQSQSLAMIVQDMLERAIVSGEYAPGEKLNEVEIATKLNVSRGPVREA
CCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCHHHHH
FRALEQAGLLRNEKNRGVTVRVVPLREAEEIYEVRAMLDESVARALAKRISPDTLKVLKG
HHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
IIQSMKDAAKTHDVTRYTELNVQFHDAMVVGVGNTHLTDTYRRLVRQLGLLRQAAIEAEE
HHHHHHHHHHHHHHHHHHEECEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCC
DAIAVSAAEHDKIVQALAGGDGEQAVALVREHLSHGLERMRRTHEQGLPSTGKSTREKPV
HHHEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
RA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]