Click here to switch to the map view.

The map label for this gene is lrpC [H]

Identifier: 78067782

GI number: 78067782

Start: 3478005

End: 3478496

Strand: Direct

Name: lrpC [H]

Synonym: Bcep18194_A6313

Alternate gene names: 78067782

Gene position: 3478005-3478496 (Clockwise)

Preceding gene: 78067780

Following gene: 78067784

Centisome position: 94.15

GC content: 70.12

Gene sequence:

>492_bases
ATGCCGAAACGCCTTTCCCCGCCTGCCGTCGCGTCGCTCGACGCGACCGACCGCGCGATCCTCGCGGCGCTGGCCGACGA
CGCGCGCATCGCGACCAGCGAACTCGCCCGGCAGATCGGGCTGTCGGCGCCCGCGACGGCCGACCGCGTGCGGCGGCTCG
AAGCGCAAGGCGTGATTGCCGCGTTCACCGTCGAGCTCGACCCGCGCGCGCTCGGCTACACGCTGCAGGCGATCGTCCGA
GTCAAGCCGCTGCCCGGCCAGCTACATCTCGTCGAAGAGATGCTGCGACGGATTCCCGAATTCGTGGAGTGCGACAAGGT
CACCGGCGACGACTGCTTCATCTGCCGGCTCTACCTGCGCACGATCGCGCACCTCGACGACATCCTGTCGAAAGTGACGG
AGCGCGCCGAGACGAGCACCGCGATCGTGAAATCGACGCCGGTGCCGCGCCGGCTGCCGCCGCTCGTCGAAGACGACGGC
GCGCACCGCTGA

Upstream 100 bases:

>100_bases
TCAGAAGAGTGGATGACTTCGATTCTAGAAACTTGCTTTCACGGCAACCACGGCTAAACTGAAGTGAATCGACCGATTCA
CCTTCGAAAGCAAAGCGATC

Downstream 100 bases:

>100_bases
CTGGCGGGTACACGCGCCGCCCGCGTGCCCGCGCGCAGCGTCACGCAGCCGCGTCGCGCGCCTCGAAGAAGGCCAACAGT
TCGTCGATCAGCGCGACAGG

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MPKRLSPPAVASLDATDRAILAALADDARIATSELARQIGLSAPATADRVRRLEAQGVIAAFTVELDPRALGYTLQAIVR
VKPLPGQLHLVEEMLRRIPEFVECDKVTGDDCFICRLYLRTIAHLDDILSKVTERAETSTAIVKSTPVPRRLPPLVEDDG
AHR

Sequences:

>Translated_163_residues
MPKRLSPPAVASLDATDRAILAALADDARIATSELARQIGLSAPATADRVRRLEAQGVIAAFTVELDPRALGYTLQAIVR
VKPLPGQLHLVEEMLRRIPEFVECDKVTGDDCFICRLYLRTIAHLDDILSKVTERAETSTAIVKSTPVPRRLPPLVEDDG
AHR
>Mature_162_residues
PKRLSPPAVASLDATDRAILAALADDARIATSELARQIGLSAPATADRVRRLEAQGVIAAFTVELDPRALGYTLQAIVRV
KPLPGQLHLVEEMLRRIPEFVECDKVTGDDCFICRLYLRTIAHLDDILSKVTERAETSTAIVKSTPVPRRLPPLVEDDGA
HR

Specific function: Transcriptional regulator with a possible role in regulation of amino acid metabolism. Plays a role in the growth phase transition [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=107, Percent_Identity=35.5140186915888, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1790182, Length=151, Percent_Identity=29.1390728476821, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR000835
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17842; Mature: 17711

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKRLSPPAVASLDATDRAILAALADDARIATSELARQIGLSAPATADRVRRLEAQGVIA
CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEE
AFTVELDPRALGYTLQAIVRVKPLPGQLHLVEEMLRRIPEFVECDKVTGDDCFICRLYLR
EEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
TIAHLDDILSKVTERAETSTAIVKSTPVPRRLPPLVEDDGAHR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PKRLSPPAVASLDATDRAILAALADDARIATSELARQIGLSAPATADRVRRLEAQGVIA
CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEE
AFTVELDPRALGYTLQAIVRVKPLPGQLHLVEEMLRRIPEFVECDKVTGDDCFICRLYLR
EEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
TIAHLDDILSKVTERAETSTAIVKSTPVPRRLPPLVEDDGAHR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9341680 [H]