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The map label for this gene is secB [H]

Identifier: 78067652

GI number: 78067652

Start: 3331104

End: 3331586

Strand: Reverse

Name: secB [H]

Synonym: Bcep18194_A6183

Alternate gene names: 78067652

Gene position: 3331586-3331104 (Counterclockwise)

Preceding gene: 78067653

Following gene: 78067651

Centisome position: 90.19

GC content: 62.11

Gene sequence:

>483_bases
ATGTCCGACGTCGAAAACCAACCGTTCTTCAACATCCAGCGCGTCTACCTGAAGGATATGTCGCTCGAGCAGCCGAATTC
GCCGGCGATCTTCCTCGAGCAGGACATGCCGTCGGTTGAAGTCGAAGTCGACGTCAAGGCCGACCGCCTCGCGGAAAGCG
TGTTCGAAGTCGTCGTGTCGGGCACCGTCACCGCGAAGGTGAAGGACAAGGTCGCGTTCCTGATCGAAGCGAAGCAGGCC
GGCATTTTCGACATCCGCAACATTCCGGACGAACAACTCGACCCGCTCGTCGGCATCGCTTGCCCGACGATCCTGTTCCC
GTACCTGCGTTCGAACATCGCCGACGCGATCACGCGCGCGGGCTTCCCGCCGATCCACCTGGCGGAAATCAACTTCCAGG
CGCTGTACGAACAGCGCCTCGCGCAGCTTCAGCAGCAGGCCGGTGCCGCAGCAGGCGCACCGAACGGCACGACGCTGAAC
TGA

Upstream 100 bases:

>100_bases
AGAATGGCCGCCGGCCGCGCCGCGGCTTGGGCGCGCAGGATTCATCCGTGGCGGCCGGCGCGAAGCCGGGCCGCCCCGTC
ACCACTTTTAGGGATACACC

Downstream 100 bases:

>100_bases
CGTTTTACTCGGAGGACCGGTGCTGGGTATGAAAGTAGCCGTTCTCGGCGCCGGTGCCTGGGGCACCGCGCTCGCGGGCC
ATCTGGCCGCGCGGCACGAT

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSDVENQPFFNIQRVYLKDMSLEQPNSPAIFLEQDMPSVEVEVDVKADRLAESVFEVVVSGTVTAKVKDKVAFLIEAKQA
GIFDIRNIPDEQLDPLVGIACPTILFPYLRSNIADAITRAGFPPIHLAEINFQALYEQRLAQLQQQAGAAAGAPNGTTLN

Sequences:

>Translated_160_residues
MSDVENQPFFNIQRVYLKDMSLEQPNSPAIFLEQDMPSVEVEVDVKADRLAESVFEVVVSGTVTAKVKDKVAFLIEAKQA
GIFDIRNIPDEQLDPLVGIACPTILFPYLRSNIADAITRAGFPPIHLAEINFQALYEQRLAQLQQQAGAAAGAPNGTTLN
>Mature_159_residues
SDVENQPFFNIQRVYLKDMSLEQPNSPAIFLEQDMPSVEVEVDVKADRLAESVFEVVVSGTVTAKVKDKVAFLIEAKQAG
IFDIRNIPDEQLDPLVGIACPTILFPYLRSNIADAITRAGFPPIHLAEINFQALYEQRLAQLQQQAGAAAGAPNGTTLN

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family [H]

Homologues:

Organism=Escherichia coli, GI1790038, Length=139, Percent_Identity=44.6043165467626, Blast_Score=129, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003708 [H]

Pfam domain/function: PF02556 SecB [H]

EC number: NA

Molecular weight: Translated: 17558; Mature: 17427

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVENQPFFNIQRVYLKDMSLEQPNSPAIFLEQDMPSVEVEVDVKADRLAESVFEVVVS
CCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHHC
GTVTAKVKDKVAFLIEAKQAGIFDIRNIPDEQLDPLVGIACPTILFPYLRSNIADAITRA
CCEEEEHHHHEEEEEECCCCCEEECCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
GFPPIHLAEINFQALYEQRLAQLQQQAGAAAGAPNGTTLN
CCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDVENQPFFNIQRVYLKDMSLEQPNSPAIFLEQDMPSVEVEVDVKADRLAESVFEVVVS
CCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHHC
GTVTAKVKDKVAFLIEAKQAGIFDIRNIPDEQLDPLVGIACPTILFPYLRSNIADAITRA
CCEEEEHHHHEEEEEECCCCCEEECCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
GFPPIHLAEINFQALYEQRLAQLQQQAGAAAGAPNGTTLN
CCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA