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The map label for this gene is cydB [H]

Identifier: 78067617

GI number: 78067617

Start: 3291539

End: 3292675

Strand: Direct

Name: cydB [H]

Synonym: Bcep18194_A6148

Alternate gene names: 78067617

Gene position: 3291539-3292675 (Clockwise)

Preceding gene: 78067616

Following gene: 78067618

Centisome position: 89.1

GC content: 66.05

Gene sequence:

>1137_bases
ATGGACTATGCAACTCTCAAGCTGATCTGGTGGCTGCTCGTCGGCGTGCTGCTGATCGGCTTCGCCGTCACCGACGGCTT
CGACATGGGCGCGACCGCGCTGCTGCCGTTCCTCGGCAAGACCGACGAGGAACGCCGCATCATCGTCAACACCGTCGGCG
CGACGTGGGAAGGCAACCAGGTGTGGCTGATCACGGCCGGCGGCGCGATGTTCGCGGCCTGGCCGCTCGTCTACGCGGCG
TCGTTCTCCGGCTTCTACTTCGCGATGCTGCTCGTGCTGTTCGCGTTGTTCTTCCGGCCGGTGGGCTTCGACTACCGCAG
CAAGCGGCCCGACCCGCGCTGGCGCGCGGGCTGGGACTGGGGCCTGTTCGTCGGCGGCTTCGTGCCGGCGCTCGTGTTCG
GCGTCGCGTTCGGCAACCTGCTGCAAGGCGTGCCGTTCAAGTTCGACAGCGACCTGCGCGTGACCTACTACGGCAGCTTC
TGGGCGCTGCTGAACCCGTTCGCGCTGCTGTGCGGGCTCGTCAGCCTCACGATGCTCGTCGCGCACGGCGCGGCCTTCAT
CAAGATGAAGACGGAAGGCGTGATCGCGCGCCGCGCGTCGGTCGCATTGCGGGCGGCGTCGTTCCTCGCGGTCGTGCTGT
TCATCCTGGCCGGCGTGCTGGTCGCGTCTTATATCGGTGGCTTCCACATCACGCACGCCGCGCCGACCGACACCGTCGCG
AACCCGCTGCTCAAGGACGTCGCCGCCGGCTCGGGCCTGTGGCTCGCGAACTACAGCGAATTCCCGTGGATGATCGCGGC
GCCCGTCGTCGCGATCGCGGGTGGCCTGATCGCGCTGCTGCTCGCCGGTTCGAAGCAGGAGAAGACGGCGTTCTTCTGCA
CGGGCCTGATGATCACCGGCGTGATCCTGACTGCCGGCTTCTCGATGTTCCCGTTCATCATGCCGTCGTCGCTCGACCCG
CGCAGCAGCCTGACCGTGTGGGATTCGACGTCGAGCCACATGACGCTGCAGGTGATGCTGTTCGCGGTGATCGTGTTCCT
GCCGCTCATCCTGCTCTACACGAGCTGGGTGTATCGCGTGATGCGCGGCAAGGTCACGCGCGAAGTGCTCGAAGAGAACA
AGCATTCGATGTATTGA

Upstream 100 bases:

>100_bases
CCGTCGTCGCTGCATACCGGCCGCTATCACCACGAAATCGCGGCCGCCAGCGAGCGCGCCCCGGCGTGAGCACGCACCTG
AAACGGAACAAGGAATCGCT

Downstream 100 bases:

>100_bases
TGCTTTGAACCGGGCGGGGTGCGCACGCGCCCTCGCCCACCGTTTCGCAAGGAGTCGGATCATGTGGTATTTCAGCTGGA
TTCTCGGTATCGGCGTCGCG

Product: cytochrome bd ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDEERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDWGLFVGGFVPALVFGVAFGNLLQGVPFKFDSDLRVTYYGSF
WALLNPFALLCGLVSLTMLVAHGAAFIKMKTEGVIARRASVALRAASFLAVVLFILAGVLVASYIGGFHITHAAPTDTVA
NPLLKDVAAGSGLWLANYSEFPWMIAAPVVAIAGGLIALLLAGSKQEKTAFFCTGLMITGVILTAGFSMFPFIMPSSLDP
RSSLTVWDSTSSHMTLQVMLFAVIVFLPLILLYTSWVYRVMRGKVTREVLEENKHSMY

Sequences:

>Translated_378_residues
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDEERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDWGLFVGGFVPALVFGVAFGNLLQGVPFKFDSDLRVTYYGSF
WALLNPFALLCGLVSLTMLVAHGAAFIKMKTEGVIARRASVALRAASFLAVVLFILAGVLVASYIGGFHITHAAPTDTVA
NPLLKDVAAGSGLWLANYSEFPWMIAAPVVAIAGGLIALLLAGSKQEKTAFFCTGLMITGVILTAGFSMFPFIMPSSLDP
RSSLTVWDSTSSHMTLQVMLFAVIVFLPLILLYTSWVYRVMRGKVTREVLEENKHSMY
>Mature_378_residues
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDEERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDWGLFVGGFVPALVFGVAFGNLLQGVPFKFDSDLRVTYYGSF
WALLNPFALLCGLVSLTMLVAHGAAFIKMKTEGVIARRASVALRAASFLAVVLFILAGVLVASYIGGFHITHAAPTDTVA
NPLLKDVAAGSGLWLANYSEFPWMIAAPVVAIAGGLIALLLAGSKQEKTAFFCTGLMITGVILTAGFSMFPFIMPSSLDP
RSSLTVWDSTSSHMTLQVMLFAVIVFLPLILLYTSWVYRVMRGKVTREVLEENKHSMY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=378, Percent_Identity=53.1746031746032, Blast_Score=410, Evalue=1e-115,
Organism=Escherichia coli, GI1787213, Length=377, Percent_Identity=52.2546419098143, Blast_Score=392, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41385; Mature: 41385

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDEERRIIVNTVGATWEGNQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCE
VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDW
EEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
GLFVGGFVPALVFGVAFGNLLQGVPFKFDSDLRVTYYGSFWALLNPFALLCGLVSLTMLV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
AHGAAFIKMKTEGVIARRASVALRAASFLAVVLFILAGVLVASYIGGFHITHAAPTDTVA
HCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHH
NPLLKDVAAGSGLWLANYSEFPWMIAAPVVAIAGGLIALLLAGSKQEKTAFFCTGLMITG
HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VILTAGFSMFPFIMPSSLDPRSSLTVWDSTSSHMTLQVMLFAVIVFLPLILLYTSWVYRV
HHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRGKVTREVLEENKHSMY
HHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDEERRIIVNTVGATWEGNQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCE
VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDW
EEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
GLFVGGFVPALVFGVAFGNLLQGVPFKFDSDLRVTYYGSFWALLNPFALLCGLVSLTMLV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
AHGAAFIKMKTEGVIARRASVALRAASFLAVVLFILAGVLVASYIGGFHITHAAPTDTVA
HCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHH
NPLLKDVAAGSGLWLANYSEFPWMIAAPVVAIAGGLIALLLAGSKQEKTAFFCTGLMITG
HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VILTAGFSMFPFIMPSSLDPRSSLTVWDSTSSHMTLQVMLFAVIVFLPLILLYTSWVYRV
HHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRGKVTREVLEENKHSMY
HHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]