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The map label for this gene is cydA [H]

Identifier: 78067616

GI number: 78067616

Start: 3289927

End: 3291507

Strand: Direct

Name: cydA [H]

Synonym: Bcep18194_A6147

Alternate gene names: 78067616

Gene position: 3289927-3291507 (Clockwise)

Preceding gene: 78067615

Following gene: 78067617

Centisome position: 89.06

GC content: 63.44

Gene sequence:

>1581_bases
ATGATAAGTAGTGAAGTCGTCGATCTGTCACGTCTGCAGTTCGGCATCACGGCGCTCTACCACTTCCTGTTCGTGCCGCT
GACACTCGGCCTGTCCTGGCTGCTCGTCATCATGGAAGCGGTTTACGTGATGACCGGCAAACAGGTCTACAAGGACATGA
CCCAGTTCTGGGGCAAGCTGTTCGGCATCAACTTCGCGATGGGCGTGACCACCGGCATCACGCTCGAATTCCAGTTCGGC
ACGAACTGGTCGTACTACTCGCACTATGTCGGCGACATCTTCGGCGTGCCGCTCGCGGTCGAAGGCCTGATGGCGTTCTT
CCTCGAATCGACGTTCGTCGGCCTGTTCTTCTTCGGCTGGAACCGCCTGTCGAAGGTCAAGCACCTGATGGTCACGTTCC
TCGTCGCGCTCGGCTCGAACCTGTCCGCGCTGTGGATCCTCGTCGCGAACGGCTGGATGAACAACCCGGTCGGCGCCGAG
TTCAACTACCAGACGATGCGCATGGAGATGACGAGCCTGTTCGACGTGCTGTTCAACCCGGTCGCGCAGGTGAAGTTCGT
GCACACCGTGTCGGCCGGCTACGTGTCGGCGGCGATGTTCGTGCTCGGCGTGTCGTCGTGGTACCTGCTGAAGAAGCGCG
ACGTCGACTTCGCGCTGCGTTCGTTCGCGGTCGCGGCCGGCTTCGGCCTCGCGGCGACGCTCTGCGTGATCGTGCTCGGC
GACGAATCGGGTTATACGACGGGCGAAGTGCAGAAGATGAAGCTCGCCGCGATCGAATCCGAATGGGAAACGCAGCCGGC
ACCCGCCTCGTTCACGCTGATCGGCATTCCGAACCAGGAAGAACAGCGCACCGACTACGCGATCAAGATCCCGTACGCGC
TCGGCCTGATCGCGACGCGCTCGATCGACGAACCGGTGATCGGCCTGCGCGAGCTCGCGAAGCACAGCGAGGAGCACATC
CAGAGCGGGATGGTCGCGTACGGCGCGCTGCAGAAGATCAAGCAGGGCGACACGAGCGACGCAACGCGCGCGCTGTTCGA
CCAGCACAAGCAGTATCTCGGCTACGGGCTGATGCTCAAGCAGTTCACGCCGAACGTGGTCGACGCGACGCCTGAGCAAA
TCAAGGCCGCCGCGAAGAAGACGATCCCGCCGGTCGCGCCCGTGTTCTTCTCGTTCCGGATCATGGTGGCTCTCGGCTTC
CTGTTCGTCGCCACGTTCATTGCCGCGTTCTGGTTCTGCGCGCGCCGCGAGCTGCTGCAGGACAACCGCCGCTGGTTCCT
CCGCTATGCGGTGTGGGCGATCCCGCTGCCGTGGATCGCGATCGAATTCGGCTGGATCGTCGCCGAGCTCGGCCGCCAGC
CGTGGACGATCGCCGGCGTGCTGCCGACGCACCTGTCCGCGTCGAGCCTGCAGCCGAGCGACCTGTACCTGAGTCTCGCG
GGCTTCATCCTGTTCTATACCGCGCTGTTCGTCATCGAGATCAAGCTGATGTTCAAGTACGCGCGCCTCGGCCCGTCGTC
GCTGCATACCGGCCGCTATCACCACGAAATCGCGGCCGCCAGCGAGCGCGCCCCGGCGTGA

Upstream 100 bases:

>100_bases
TTCAATCATCCGCAGGCCGAGCACATGTCGTTGCCGCCTGCCGCCGTCGCCGAGAAACTGCTTTCGGTACCGGCGCCTGC
ATCTACCGAGGGAGACCACC

Downstream 100 bases:

>100_bases
GCACGCACCTGAAACGGAACAAGGAATCGCTATGGACTATGCAACTCTCAAGCTGATCTGGTGGCTGCTCGTCGGCGTGC
TGCTGATCGGCTTCGCCGTC

Product: cytochrome bd ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 526; Mature: 526

Protein sequence:

>526_residues
MISSEVVDLSRLQFGITALYHFLFVPLTLGLSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLSKVKHLMVTFLVALGSNLSALWILVANGWMNNPVGAE
FNYQTMRMEMTSLFDVLFNPVAQVKFVHTVSAGYVSAAMFVLGVSSWYLLKKRDVDFALRSFAVAAGFGLAATLCVIVLG
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGIPNQEEQRTDYAIKIPYALGLIATRSIDEPVIGLRELAKHSEEHI
QSGMVAYGALQKIKQGDTSDATRALFDQHKQYLGYGLMLKQFTPNVVDATPEQIKAAAKKTIPPVAPVFFSFRIMVALGF
LFVATFIAAFWFCARRELLQDNRRWFLRYAVWAIPLPWIAIEFGWIVAELGRQPWTIAGVLPTHLSASSLQPSDLYLSLA
GFILFYTALFVIEIKLMFKYARLGPSSLHTGRYHHEIAAASERAPA

Sequences:

>Translated_526_residues
MISSEVVDLSRLQFGITALYHFLFVPLTLGLSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLSKVKHLMVTFLVALGSNLSALWILVANGWMNNPVGAE
FNYQTMRMEMTSLFDVLFNPVAQVKFVHTVSAGYVSAAMFVLGVSSWYLLKKRDVDFALRSFAVAAGFGLAATLCVIVLG
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGIPNQEEQRTDYAIKIPYALGLIATRSIDEPVIGLRELAKHSEEHI
QSGMVAYGALQKIKQGDTSDATRALFDQHKQYLGYGLMLKQFTPNVVDATPEQIKAAAKKTIPPVAPVFFSFRIMVALGF
LFVATFIAAFWFCARRELLQDNRRWFLRYAVWAIPLPWIAIEFGWIVAELGRQPWTIAGVLPTHLSASSLQPSDLYLSLA
GFILFYTALFVIEIKLMFKYARLGPSSLHTGRYHHEIAAASERAPA
>Mature_526_residues
MISSEVVDLSRLQFGITALYHFLFVPLTLGLSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLSKVKHLMVTFLVALGSNLSALWILVANGWMNNPVGAE
FNYQTMRMEMTSLFDVLFNPVAQVKFVHTVSAGYVSAAMFVLGVSSWYLLKKRDVDFALRSFAVAAGFGLAATLCVIVLG
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGIPNQEEQRTDYAIKIPYALGLIATRSIDEPVIGLRELAKHSEEHI
QSGMVAYGALQKIKQGDTSDATRALFDQHKQYLGYGLMLKQFTPNVVDATPEQIKAAAKKTIPPVAPVFFSFRIMVALGF
LFVATFIAAFWFCARRELLQDNRRWFLRYAVWAIPLPWIAIEFGWIVAELGRQPWTIAGVLPTHLSASSLQPSDLYLSLA
GFILFYTALFVIEIKLMFKYARLGPSSLHTGRYHHEIAAASERAPA

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=519, Percent_Identity=65.1252408477842, Blast_Score=720, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=506, Percent_Identity=55.1383399209486, Blast_Score=574, Evalue=1e-165,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58811; Mature: 58811

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSEVVDLSRLQFGITALYHFLFVPLTLGLSWLLVIMEAVYVMTGKQVYKDMTQFWGKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW
HCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
NRLSKVKHLMVTFLVALGSNLSALWILVANGWMNNPVGAEFNYQTMRMEMTSLFDVLFNP
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCH
VAQVKFVHTVSAGYVSAAMFVLGVSSWYLLKKRDVDFALRSFAVAAGFGLAATLCVIVLG
HHHEEEHHHHHHHHHHHHHHHHHCCHHEEEECCCHHHHHHHHHHHHHHHHHHHHEEEEEE
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGIPNQEEQRTDYAIKIPYALGLIATR
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEECCHHHHHHHHC
SIDEPVIGLRELAKHSEEHIQSGMVAYGALQKIKQGDTSDATRALFDQHKQYLGYGLMLK
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
QFTPNVVDATPEQIKAAAKKTIPPVAPVFFSFRIMVALGFLFVATFIAAFWFCARRELLQ
HCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DNRRWFLRYAVWAIPLPWIAIEFGWIVAELGRQPWTIAGVLPTHLSASSLQPSDLYLSLA
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCHHHHHHHH
GFILFYTALFVIEIKLMFKYARLGPSSLHTGRYHHEIAAASERAPA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MISSEVVDLSRLQFGITALYHFLFVPLTLGLSWLLVIMEAVYVMTGKQVYKDMTQFWGKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW
HCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
NRLSKVKHLMVTFLVALGSNLSALWILVANGWMNNPVGAEFNYQTMRMEMTSLFDVLFNP
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCH
VAQVKFVHTVSAGYVSAAMFVLGVSSWYLLKKRDVDFALRSFAVAAGFGLAATLCVIVLG
HHHEEEHHHHHHHHHHHHHHHHHCCHHEEEECCCHHHHHHHHHHHHHHHHHHHHEEEEEE
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGIPNQEEQRTDYAIKIPYALGLIATR
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEECCHHHHHHHHC
SIDEPVIGLRELAKHSEEHIQSGMVAYGALQKIKQGDTSDATRALFDQHKQYLGYGLMLK
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
QFTPNVVDATPEQIKAAAKKTIPPVAPVFFSFRIMVALGFLFVATFIAAFWFCARRELLQ
HCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DNRRWFLRYAVWAIPLPWIAIEFGWIVAELGRQPWTIAGVLPTHLSASSLQPSDLYLSLA
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCHHHHHHHH
GFILFYTALFVIEIKLMFKYARLGPSSLHTGRYHHEIAAASERAPA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]