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The map label for this gene is pcl [H]

Identifier: 78067560

GI number: 78067560

Start: 3233788

End: 3235542

Strand: Direct

Name: pcl [H]

Synonym: Bcep18194_A6091

Alternate gene names: 78067560

Gene position: 3233788-3235542 (Clockwise)

Preceding gene: 78067559

Following gene: 78067561

Centisome position: 87.54

GC content: 72.76

Gene sequence:

>1755_bases
ATGCCGACTCACCCGCTGGTTTTTCATTCGTCTCCGGACCAGACGATCGCCTGGCGCGACGGCGCGCCCGTCACCGTGCG
CGCGTTCGTCGCCGACGTCGCACGCGTGGCCGCCGCGCTGCCCACCGGCGGCCACGTGTTCAACGTGTGCCGCGACCGCT
ACCGCTTCGCGGTCAGCCTGTGCGCCGCGCTCGTGGCCGGCAAGATCAGCCTGCTGCCGTCGACGCACACGCCGGAAATG
GTCCGCCAGCTCGCCTCGTTCGCGCCCGACGCGTTCTGCCTGCACGACGCGCCCGACTGCGCGATCGACCTGCCGCGCTT
CGCGTACCCCGATGCCGCCCCCGGCGCGCTCGCGAGCGATGCGCCGTTCGTCGTGCCGCAGATCGATGCGGCGCGGATCA
TGGCCTACGTGTTCACGTCCGGCTCGACCGGCGCGCCGGTGCCGCACCGCAAGACCTGGGGCTTCCTGGTCGGCTGCGTG
CGCGCGGCGGCCGACCGCCTCGGGCTGCTCGACGGCCGCGCGGCCACGCTGATCGGCACGGTGCCCGCGCAGCACATGTA
CGGCTTCGAGTCGACGGTGCTGCTCGCGCTGATCGGCGGCCTCGCGTTCAGCAACCGCCAGCCGTTCTACCCGGTCGACA
TTCGCGACGAACTCGACGCGATCCCGCAGCCGCGCGTGCTCGTCACGTCGCCGATCCACCTGCGTGCGCTGCTGGCGGCC
GGCCATGCGCTGCCACCCGCGGCGCTCGTGCTGTCGGCCACCGCGCCGCTGTCGGAAAAGCTCGCGTGCGAAGCCGAGGC
CGCGCTCGACGCGCCGCTCGTCGAGATCTACGGCAGCACCGAAACCGGCCAGATCGCCACGCGCCGCACGTCGCAAGGCG
CGACGTGGGCGTTGTTTCCGGATATCCGGCTCGACGCGCGCGACGACCCGGAGAGCGACGACGGCGAGCCAACGATCTGG
GTGTCGGGCGGGCACGTCGAGGCGCCCGTGCCGATGGGCGATGCGCTCGAACTGCTCGGCGACGGCCGGTTCCTGCTGCA
CGGCCGCAAGGCCGACCTCGTCAACATCGCCGGCAAGCGCACGTCGCTCGCGTACCTGAACCATCAGCTCAATGCGATTC
CGCAGGTGATCGACGGCGTGTTCTTCATGCCCGACGAAGCCGCGCCCGCACACGCCGACGCGGGCCTCGAACCGGTCACG
CGTCTCGTCGCGCTGGTCGTCGCACCGACGCTCGCGGCAGCCGACCTGCAGCGCGCGCTGCGCGAGCGAATCGACCCCGC
GTTCATGCCGCGCCCGCTCGTGTTCGTCGACGCGCTGCCGCGCAACGAAACGGGCAAGCTGCCGCGCGACGTGCTCGCCG
CGCTCGTTGCGCAACATGCGCGCACCGCAGCCGCGCCGACGCCCGTATGCGACCCGGCCGGCACGCCCGCGCCTGCACCC
GCGCTCGGGTTCACGATCCCCGCCGATCACCCCGCACTGCCAGGCCACTTCCCCGGCCATCCGGTCGTGCCGGGCGTCGT
GCTGCTCGATCACGCGATCCAGGCGATCGGCACGGCGCTGAACCGCCCGCTGCACACGTGGCGGCTCGGGTCCGCGAAAT
TCCTGAGCCCGGTCGCCCCCGGCGAACCGCTCGATCTCGCCTACGACGCGGCCTCCAGCGGCGCGATCCGCTTCACGCTG
CGCGCCGGGGCGCGTGAAGTTGCGAGCGGTGTGCTGTCCGCACCGCCGGCCGCGCAGGATGGCGCGCAGCCATGA

Upstream 100 bases:

>100_bases
TCGCGCGACGACCCACGCATCGCAGCCGTCACGATGAATTCACGGCCGGCGCGGCGCCGCCGTGCGGCGCACCGGCCTTC
GCTCCCGTTTTGACCGATTT

Downstream 100 bases:

>100_bases
AGCGCACCGCGTGGGCCGAACGCCAGGAGCGCAGCAATGCCGGCTTGCTGCGCGCGATGACGTGGATCTCGCTGCGCTTC
GGCCGGCAGCGCGCGCGCGT

Product: Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase-like

Products: NA

Alternate protein names: 4CL; 4-coumaroyl-CoA synthase [H]

Number of amino acids: Translated: 584; Mature: 583

Protein sequence:

>584_residues
MPTHPLVFHSSPDQTIAWRDGAPVTVRAFVADVARVAAALPTGGHVFNVCRDRYRFAVSLCAALVAGKISLLPSTHTPEM
VRQLASFAPDAFCLHDAPDCAIDLPRFAYPDAAPGALASDAPFVVPQIDAARIMAYVFTSGSTGAPVPHRKTWGFLVGCV
RAAADRLGLLDGRAATLIGTVPAQHMYGFESTVLLALIGGLAFSNRQPFYPVDIRDELDAIPQPRVLVTSPIHLRALLAA
GHALPPAALVLSATAPLSEKLACEAEAALDAPLVEIYGSTETGQIATRRTSQGATWALFPDIRLDARDDPESDDGEPTIW
VSGGHVEAPVPMGDALELLGDGRFLLHGRKADLVNIAGKRTSLAYLNHQLNAIPQVIDGVFFMPDEAAPAHADAGLEPVT
RLVALVVAPTLAAADLQRALRERIDPAFMPRPLVFVDALPRNETGKLPRDVLAALVAQHARTAAAPTPVCDPAGTPAPAP
ALGFTIPADHPALPGHFPGHPVVPGVVLLDHAIQAIGTALNRPLHTWRLGSAKFLSPVAPGEPLDLAYDAASSGAIRFTL
RAGAREVASGVLSAPPAAQDGAQP

Sequences:

>Translated_584_residues
MPTHPLVFHSSPDQTIAWRDGAPVTVRAFVADVARVAAALPTGGHVFNVCRDRYRFAVSLCAALVAGKISLLPSTHTPEM
VRQLASFAPDAFCLHDAPDCAIDLPRFAYPDAAPGALASDAPFVVPQIDAARIMAYVFTSGSTGAPVPHRKTWGFLVGCV
RAAADRLGLLDGRAATLIGTVPAQHMYGFESTVLLALIGGLAFSNRQPFYPVDIRDELDAIPQPRVLVTSPIHLRALLAA
GHALPPAALVLSATAPLSEKLACEAEAALDAPLVEIYGSTETGQIATRRTSQGATWALFPDIRLDARDDPESDDGEPTIW
VSGGHVEAPVPMGDALELLGDGRFLLHGRKADLVNIAGKRTSLAYLNHQLNAIPQVIDGVFFMPDEAAPAHADAGLEPVT
RLVALVVAPTLAAADLQRALRERIDPAFMPRPLVFVDALPRNETGKLPRDVLAALVAQHARTAAAPTPVCDPAGTPAPAP
ALGFTIPADHPALPGHFPGHPVVPGVVLLDHAIQAIGTALNRPLHTWRLGSAKFLSPVAPGEPLDLAYDAASSGAIRFTL
RAGAREVASGVLSAPPAAQDGAQP
>Mature_583_residues
PTHPLVFHSSPDQTIAWRDGAPVTVRAFVADVARVAAALPTGGHVFNVCRDRYRFAVSLCAALVAGKISLLPSTHTPEMV
RQLASFAPDAFCLHDAPDCAIDLPRFAYPDAAPGALASDAPFVVPQIDAARIMAYVFTSGSTGAPVPHRKTWGFLVGCVR
AAADRLGLLDGRAATLIGTVPAQHMYGFESTVLLALIGGLAFSNRQPFYPVDIRDELDAIPQPRVLVTSPIHLRALLAAG
HALPPAALVLSATAPLSEKLACEAEAALDAPLVEIYGSTETGQIATRRTSQGATWALFPDIRLDARDDPESDDGEPTIWV
SGGHVEAPVPMGDALELLGDGRFLLHGRKADLVNIAGKRTSLAYLNHQLNAIPQVIDGVFFMPDEAAPAHADAGLEPVTR
LVALVVAPTLAAADLQRALRERIDPAFMPRPLVFVDALPRNETGKLPRDVLAALVAQHARTAAAPTPVCDPAGTPAPAPA
LGFTIPADHPALPGHFPGHPVVPGVVLLDHAIQAIGTALNRPLHTWRLGSAKFLSPVAPGEPLDLAYDAASSGAIRFTLR
AGAREVASGVLSAPPAAQDGAQP

Specific function: Converts p-coumaric acid into p-coumaryl CoA. This is necessary for the activation of the photoactive yellow protein (PYP) chromophore [H]

COG id: COG0365

COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012743
- InterPro:   IPR020845
- InterPro:   IPR000873 [H]

Pfam domain/function: PF00501 AMP-binding [H]

EC number: =6.2.1.12 [H]

Molecular weight: Translated: 61214; Mature: 61082

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTHPLVFHSSPDQTIAWRDGAPVTVRAFVADVARVAAALPTGGHVFNVCRDRYRFAVSL
CCCCCEEEECCCCCEEEECCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
CAALVAGKISLLPSTHTPEMVRQLASFAPDAFCLHDAPDCAIDLPRFAYPDAAPGALASD
HHHHHHCCCEECCCCCCHHHHHHHHHHCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCC
APFVVPQIDAARIMAYVFTSGSTGAPVPHRKTWGFLVGCVRAAADRLGLLDGRAATLIGT
CCEEEECCCHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
VPAQHMYGFESTVLLALIGGLAFSNRQPFYPVDIRDELDAIPQPRVLVTSPIHLRALLAA
CCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCEEEECCHHHHHHHHC
GHALPPAALVLSATAPLSEKLACEAEAALDAPLVEIYGSTETGQIATRRTSQGATWALFP
CCCCCCHHEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCEEEECC
DIRLDARDDPESDDGEPTIWVSGGHVEAPVPMGDALELLGDGRFLLHGRKADLVNIAGKR
CEEECCCCCCCCCCCCEEEEEECCEEECCCCCCHHHHHHCCCEEEEECCCCCEEEECCCC
TSLAYLNHQLNAIPQVIDGVFFMPDEAAPAHADAGLEPVTRLVALVVAPTLAAADLQRAL
HHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RERIDPAFMPRPLVFVDALPRNETGKLPRDVLAALVAQHARTAAAPTPVCDPAGTPAPAP
HHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
ALGFTIPADHPALPGHFPGHPVVPGVVLLDHAIQAIGTALNRPLHTWRLGSAKFLSPVAP
CCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCHHHCCCCCC
GEPLDLAYDAASSGAIRFTLRAGAREVASGVLSAPPAAQDGAQP
CCCCEEEECCCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PTHPLVFHSSPDQTIAWRDGAPVTVRAFVADVARVAAALPTGGHVFNVCRDRYRFAVSL
CCCCEEEECCCCCEEEECCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
CAALVAGKISLLPSTHTPEMVRQLASFAPDAFCLHDAPDCAIDLPRFAYPDAAPGALASD
HHHHHHCCCEECCCCCCHHHHHHHHHHCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCC
APFVVPQIDAARIMAYVFTSGSTGAPVPHRKTWGFLVGCVRAAADRLGLLDGRAATLIGT
CCEEEECCCHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
VPAQHMYGFESTVLLALIGGLAFSNRQPFYPVDIRDELDAIPQPRVLVTSPIHLRALLAA
CCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCEEEECCHHHHHHHHC
GHALPPAALVLSATAPLSEKLACEAEAALDAPLVEIYGSTETGQIATRRTSQGATWALFP
CCCCCCHHEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCEEEECC
DIRLDARDDPESDDGEPTIWVSGGHVEAPVPMGDALELLGDGRFLLHGRKADLVNIAGKR
CEEECCCCCCCCCCCCEEEEEECCEEECCCCCCHHHHHHCCCEEEEECCCCCEEEECCCC
TSLAYLNHQLNAIPQVIDGVFFMPDEAAPAHADAGLEPVTRLVALVVAPTLAAADLQRAL
HHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RERIDPAFMPRPLVFVDALPRNETGKLPRDVLAALVAQHARTAAAPTPVCDPAGTPAPAP
HHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
ALGFTIPADHPALPGHFPGHPVVPGVVLLDHAIQAIGTALNRPLHTWRLGSAKFLSPVAP
CCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCHHHCCCCCC
GEPLDLAYDAASSGAIRFTLRAGAREVASGVLSAPPAAQDGAQP
CCCCEEEECCCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA