Click here to switch to the map view.

The map label for this gene is fdhD [H]

Identifier: 78067513

GI number: 78067513

Start: 3182876

End: 3183712

Strand: Direct

Name: fdhD [H]

Synonym: Bcep18194_A6044

Alternate gene names: 78067513

Gene position: 3182876-3183712 (Clockwise)

Preceding gene: 78067511

Following gene: 78067532

Centisome position: 86.16

GC content: 69.53

Gene sequence:

>837_bases
GTGAATCCGACCGAATCCGGTGACATGCGCGACGAACCGCGCGGCGCGATCGAACTGTCCGTGCGCCGCACGCGCGGCGG
CGCCGTCGAAACCGCCCACGACTACGTGGGCCAGGAATGGCCCGTCGCGCTCGTCTTCAACGGCATCTCGCATGCGGTGA
TGATGTGTACGCCGTGCGACCTCGAAGCATTCGCGGTCGGTTTCGCGATCTCGGAAGGGATCGTCGCGCGCGGCAGCGAC
ATCAAGGACATCGACGTGATCCTGCACGCCGACGCGCCGCTGCCACACGCGGAAGTCCACCTGGAAGTCGTCCAGCAGGC
GTTCGCCGCGCTGAAGGATCGGCGCCGCGCGCTCGCGGGGCGCACCGGCTGCGGCGTATGCGGGATCGAAAGCATCGACC
TGCTCGACCTCGCGCCCGAACGCGTGCCCGATACGGGCTTTCTTGCGCGCCTCGCACCCGACGCGCTGACGCGCGCCGCG
CAGGCGCTGCCGGCCCACCAGGCGCTCACGCGGCTCACGGGCGGCCTGCATGCGGCTGCGTGGTGCGACGCAACAGGCGC
GATCCGGATGGCGTTTGAAGATGTTGGCCGCCACAACGCACTCGACAAGCTGATCGGCTCGCTCGTGCTGTCGCGCGCCG
ACGCGACCGACGGCTTCGTGTTCCTGTCTAGCCGCGCGAGCTACGAGCTCGTGCGCAAGGCCGCACGGGTCGGCATCCCG
CTGGTGGCAACCATCTCCGCGCCGTCGTCGCTCGCGATCGAGATCGCGAAAGCGGCCGGCTTGCGGCTCGTCAGCTTCTG
CCGCGAAACCGGCCACGTCGACTACGGCACGGCCTGA

Upstream 100 bases:

>100_bases
ATACCGGCGCGGCCGGCTTGCCTGAGGTATTTTAGAACCTCTGCGCGCGGGCGGCGGATACGATTGCCGCCGGCCTCGCG
CCGAATCAACGGGAGTGCTC

Downstream 100 bases:

>100_bases
TCGCGCTCGCGGGAGTGCGCCGGCGGTCCGCCGCCGGCGTGCCCCGCTCCGTCAGTCGAACTGACGGAAATCCGGCTTGC
GCTTCTCGAAGAACGCCGTC

Product: formate dehydrogenase, subunit FdhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MNPTESGDMRDEPRGAIELSVRRTRGGAVETAHDYVGQEWPVALVFNGISHAVMMCTPCDLEAFAVGFAISEGIVARGSD
IKDIDVILHADAPLPHAEVHLEVVQQAFAALKDRRRALAGRTGCGVCGIESIDLLDLAPERVPDTGFLARLAPDALTRAA
QALPAHQALTRLTGGLHAAAWCDATGAIRMAFEDVGRHNALDKLIGSLVLSRADATDGFVFLSSRASYELVRKAARVGIP
LVATISAPSSLAIEIAKAAGLRLVSFCRETGHVDYGTA

Sequences:

>Translated_278_residues
MNPTESGDMRDEPRGAIELSVRRTRGGAVETAHDYVGQEWPVALVFNGISHAVMMCTPCDLEAFAVGFAISEGIVARGSD
IKDIDVILHADAPLPHAEVHLEVVQQAFAALKDRRRALAGRTGCGVCGIESIDLLDLAPERVPDTGFLARLAPDALTRAA
QALPAHQALTRLTGGLHAAAWCDATGAIRMAFEDVGRHNALDKLIGSLVLSRADATDGFVFLSSRASYELVRKAARVGIP
LVATISAPSSLAIEIAKAAGLRLVSFCRETGHVDYGTA
>Mature_278_residues
MNPTESGDMRDEPRGAIELSVRRTRGGAVETAHDYVGQEWPVALVFNGISHAVMMCTPCDLEAFAVGFAISEGIVARGSD
IKDIDVILHADAPLPHAEVHLEVVQQAFAALKDRRRALAGRTGCGVCGIESIDLLDLAPERVPDTGFLARLAPDALTRAA
QALPAHQALTRLTGGLHAAAWCDATGAIRMAFEDVGRHNALDKLIGSLVLSRADATDGFVFLSSRASYELVRKAARVGIP
LVATISAPSSLAIEIAKAAGLRLVSFCRETGHVDYGTA

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=235, Percent_Identity=44.6808510638298, Blast_Score=191, Evalue=6e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 29399; Mature: 29399

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPTESGDMRDEPRGAIELSVRRTRGGAVETAHDYVGQEWPVALVFNGISHAVMMCTPCD
CCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCEEEEECCCC
LEAFAVGFAISEGIVARGSDIKDIDVILHADAPLPHAEVHLEVVQQAFAALKDRRRALAG
HHHHHHHHHHHCCCEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
RTGCGVCGIESIDLLDLAPERVPDTGFLARLAPDALTRAAQALPAHQALTRLTGGLHAAA
CCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHCCHHHHHHHHHCCCHHHH
WCDATGAIRMAFEDVGRHNALDKLIGSLVLSRADATDGFVFLSSRASYELVRKAARVGIP
HHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCC
LVATISAPSSLAIEIAKAAGLRLVSFCRETGHVDYGTA
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNPTESGDMRDEPRGAIELSVRRTRGGAVETAHDYVGQEWPVALVFNGISHAVMMCTPCD
CCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCEEEEECCCC
LEAFAVGFAISEGIVARGSDIKDIDVILHADAPLPHAEVHLEVVQQAFAALKDRRRALAG
HHHHHHHHHHHCCCEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
RTGCGVCGIESIDLLDLAPERVPDTGFLARLAPDALTRAAQALPAHQALTRLTGGLHAAA
CCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHCCHHHHHHHHHCCCHHHH
WCDATGAIRMAFEDVGRHNALDKLIGSLVLSRADATDGFVFLSSRASYELVRKAARVGIP
HHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCC
LVATISAPSSLAIEIAKAAGLRLVSFCRETGHVDYGTA
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA