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The map label for this gene is ycjN [C]

Identifier: 78067395

GI number: 78067395

Start: 3049528

End: 3050853

Strand: Reverse

Name: ycjN [C]

Synonym: Bcep18194_A5926

Alternate gene names: 78067395

Gene position: 3050853-3049528 (Counterclockwise)

Preceding gene: 78067396

Following gene: 78067394

Centisome position: 82.59

GC content: 66.59

Gene sequence:

>1326_bases
ATGCAACGAAAGATGCTCGACGCCGCCGCGCGCTGCTTCGCCGGAGCCGCGCTCGCGACGGCGGCCAGCGCCGCGTCCGC
CGGCACGCTGACGATCGCGACGCTGAACAATCCCGACATGATCGAGCTGAAGAAGCTGTCGCCGGCGTTCGAGAAGGCGA
ACCCGGACATCAAGCTGAACTGGGTGATCCTCGAGGAGAACGTGCTGCGCCAGCGCGCGACGACCGACATCACGACCGGC
AGCGGCCAGTTCGACGTGATGGCGATCGGCACCTACGAGACGCCGCAGTGGGGCAAGCGCGGCTGGCTCGCGCCGATGAC
GGGCCTGCCCGCCGACTACGACCTGAACGACATCGTGAAGACCGCGCGCGACAGCCTGTCGTACAACGGCCAGCTGTACG
CGCTGCCGTTCTACGTCGAGAGCTCGATGACGTTCTACCGCAAGGACCTGTTCGCGGCGAAGGGGCTGAAGATGCCCGAC
CAGCCGACCTACGACCAGATCGCCGAATTCGCGGACAAGCTCACCGACAAGGCGAAGGGCACCTACGGGATCTGCCTGCG
CGGCAAGGCCGGCTGGGGCGAGAACATGGCGTACGTGTCGACGGTCGTGAACACGTTCGGCGGGCGCTGGTTCGACGAGA
ACTGGAATGCGCAGCTCACGTCGCCGGAATGGAAGAAGGCGATCACGTTCTACGTGAACCTGCTGAAGAAAGACGGCCCG
CCGGGAGCGAGCTCGAACGGCTTCAACGAGAACCTGACCCTGACCGCATCGGGCAAGTGCGCGATGTGGATCGATGCGAC
GGTCGCGGCCGGCATGCTCTATAACAAACAGCAGTCGCAGGTCGCCGACAAGATCGGCTTCGCGGCCGCGCCGGTCGCGG
CCACGCCGAAGGGCTCGCACTGGCTGTGGGCGTGGGCGCTGGCCGTGCCGAAGACGTCGAAGCAGCAGGACGCCGCACGC
AAGTTCATCGCGTGGGCGACGTCGAAGCAGTACATCGAGATGGTCGGCAAGGATGAAGGCTGGGCGTCGGTGCCGCCGGG
CACGCGCACGTCGACGTATCAGCGCCCCGAGTACAAGGCCGCCGCGCCGTTCTCGGACTTCGTGCTGAAGGCGATCGAGA
CGGCCGACCCGAACGATCCGTCGCTGAAGAAGGTGCCGTACACGGGCGTGCAGTACGTCGGGATTCCTGAATTCCAGTCG
TTCGGCACGGTGGTCGGCCAGTCGATCGCCGGTGCGGTGGCCGGCCAGATGACGGTCGACCAGGCGCTTGCCGCCGGGCA
GGCCGCCGCCGACCGCGCAGTGCGGCAGGCCGGCTACAAGAAGTAA

Upstream 100 bases:

>100_bases
GCGCACTATGCGCGCGCGTGCGGAATGCAGCGGCCGGCGTGACGGGCCGCGAAGGAAACGCAGTACCGACGACACTTCGA
ACAAACACAGGAGACATGCC

Downstream 100 bases:

>100_bases
CGCGGCCCGCACCGTGCGCGCTGGCGCACGGTGCGCGTCGTCGAAGCTGACAGGCGGGCAAGCCTTCGCGCCCGCGCATC
AACCGGAGGGACTCCGATCA

Product: ABC sugar transporter, periplasmic ligand binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MQRKMLDAAARCFAGAALATAASAASAGTLTIATLNNPDMIELKKLSPAFEKANPDIKLNWVILEENVLRQRATTDITTG
SGQFDVMAIGTYETPQWGKRGWLAPMTGLPADYDLNDIVKTARDSLSYNGQLYALPFYVESSMTFYRKDLFAAKGLKMPD
QPTYDQIAEFADKLTDKAKGTYGICLRGKAGWGENMAYVSTVVNTFGGRWFDENWNAQLTSPEWKKAITFYVNLLKKDGP
PGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGFAAAPVAATPKGSHWLWAWALAVPKTSKQQDAAR
KFIAWATSKQYIEMVGKDEGWASVPPGTRTSTYQRPEYKAAAPFSDFVLKAIETADPNDPSLKKVPYTGVQYVGIPEFQS
FGTVVGQSIAGAVAGQMTVDQALAAGQAAADRAVRQAGYKK

Sequences:

>Translated_441_residues
MQRKMLDAAARCFAGAALATAASAASAGTLTIATLNNPDMIELKKLSPAFEKANPDIKLNWVILEENVLRQRATTDITTG
SGQFDVMAIGTYETPQWGKRGWLAPMTGLPADYDLNDIVKTARDSLSYNGQLYALPFYVESSMTFYRKDLFAAKGLKMPD
QPTYDQIAEFADKLTDKAKGTYGICLRGKAGWGENMAYVSTVVNTFGGRWFDENWNAQLTSPEWKKAITFYVNLLKKDGP
PGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGFAAAPVAATPKGSHWLWAWALAVPKTSKQQDAAR
KFIAWATSKQYIEMVGKDEGWASVPPGTRTSTYQRPEYKAAAPFSDFVLKAIETADPNDPSLKKVPYTGVQYVGIPEFQS
FGTVVGQSIAGAVAGQMTVDQALAAGQAAADRAVRQAGYKK
>Mature_441_residues
MQRKMLDAAARCFAGAALATAASAASAGTLTIATLNNPDMIELKKLSPAFEKANPDIKLNWVILEENVLRQRATTDITTG
SGQFDVMAIGTYETPQWGKRGWLAPMTGLPADYDLNDIVKTARDSLSYNGQLYALPFYVESSMTFYRKDLFAAKGLKMPD
QPTYDQIAEFADKLTDKAKGTYGICLRGKAGWGENMAYVSTVVNTFGGRWFDENWNAQLTSPEWKKAITFYVNLLKKDGP
PGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGFAAAPVAATPKGSHWLWAWALAVPKTSKQQDAAR
KFIAWATSKQYIEMVGKDEGWASVPPGTRTSTYQRPEYKAAAPFSDFVLKAIETADPNDPSLKKVPYTGVQYVGIPEFQS
FGTVVGQSIAGAVAGQMTVDQALAAGQAAADRAVRQAGYKK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47813; Mature: 47813

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRKMLDAAARCFAGAALATAASAASAGTLTIATLNNPDMIELKKLSPAFEKANPDIKLN
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCHHHHCCCCEEEE
WVILEENVLRQRATTDITTGSGQFDVMAIGTYETPQWGKRGWLAPMTGLPADYDLNDIVK
EEEECHHHHHHHHCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
TARDSLSYNGQLYALPFYVESSMTFYRKDLFAAKGLKMPDQPTYDQIAEFADKLTDKAKG
HHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
TYGICLRGKAGWGENMAYVSTVVNTFGGRWFDENWNAQLTSPEWKKAITFYVNLLKKDGP
CEEEEEECCCCCCCCHHHHHHHHHHHCCCEECCCCCCEECCHHHHHHHHHHHHHHHCCCC
PGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGFAAAPVAATPKGSH
CCCCCCCCCCCEEEEECCCEEEEEHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCC
WLWAWALAVPKTSKQQDAARKFIAWATSKQYIEMVGKDEGWASVPPGTRTSTYQRPEYKA
EEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
AAPFSDFVLKAIETADPNDPSLKKVPYTGVQYVGIPEFQSFGTVVGQSIAGAVAGQMTVD
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
QALAAGQAAADRAVRQAGYKK
HHHHHCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQRKMLDAAARCFAGAALATAASAASAGTLTIATLNNPDMIELKKLSPAFEKANPDIKLN
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCHHHHCCCCEEEE
WVILEENVLRQRATTDITTGSGQFDVMAIGTYETPQWGKRGWLAPMTGLPADYDLNDIVK
EEEECHHHHHHHHCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
TARDSLSYNGQLYALPFYVESSMTFYRKDLFAAKGLKMPDQPTYDQIAEFADKLTDKAKG
HHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
TYGICLRGKAGWGENMAYVSTVVNTFGGRWFDENWNAQLTSPEWKKAITFYVNLLKKDGP
CEEEEEECCCCCCCCHHHHHHHHHHHCCCEECCCCCCEECCHHHHHHHHHHHHHHHCCCC
PGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGFAAAPVAATPKGSH
CCCCCCCCCCCEEEEECCCEEEEEHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCC
WLWAWALAVPKTSKQQDAARKFIAWATSKQYIEMVGKDEGWASVPPGTRTSTYQRPEYKA
EEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
AAPFSDFVLKAIETADPNDPSLKKVPYTGVQYVGIPEFQSFGTVVGQSIAGAVAGQMTVD
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
QALAAGQAAADRAVRQAGYKK
HHHHHCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]