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The map label for this gene is ybbN [H]

Identifier: 78067367

GI number: 78067367

Start: 3018473

End: 3019321

Strand: Direct

Name: ybbN [H]

Synonym: Bcep18194_A5898

Alternate gene names: 78067367

Gene position: 3018473-3019321 (Clockwise)

Preceding gene: 78067366

Following gene: 78067369

Centisome position: 81.71

GC content: 68.9

Gene sequence:

>849_bases
ATGGACACCACGCTTGCCACATTCGAGAAAGACGTCATCGAGGCGTCGCTGGACGCACCCGTGCTGGTCGACTTCTGGGC
GCCGTGGTGCGGCCCCTGCAAGACGCTCGGCCCGCTGCTGGAAAAGCTCGAAGGCGACTACGAAGGCCGCTGGAAGCTCG
TGAAGGTCAACGTCGACGAGAACCAGGAACTCGCCGCGCACTTCCAGACGCGCAGCATCCCGCACGTGATCGCGTTTGCC
GACGGGCGCCCGGTCGACCAGTTCGTCGGCGTGCTCCCCGAAGGCCAGCTGCGCGCCTTCCTCGACCGGCTGCTGCCGGC
GCCCGAGGAAGCCGAACGGCGTGCCGCGCAGTACGCGATGGCCGAGGAGCGCTACGACGACGCGCTCACGCACCTCGAGG
CGGCGCTCGCGCTGAACCCCGGCTTCGACGACGCGCGCCTCGATTTGATCGAACTGCTGCTCGCGAGCAACCAGGTCGAC
GCCGCGCGCGCCGAGACCGAACGCCTGTCGCCGCAGACCCTGCAGAACGGCGACCCGCGCTACCAGGCGATCAAAACCCG
TTTCGACGCACTCGAAGCCACGGCCGACCTGCCGCCGACCGATGCGCTCGAAGCGCGCATCGCGGCGAACCCGGCCGATC
TCGACGCGCGTTTCGATCTCGCGCAGAGCCTGATCGCGCGGCGCGCGTACGAAGGCGCGGTGGAGCAGTTGCTGGAAATC
GTCACGCGCGATCGCGCGTACGGCGACGATCTCGGCCGCCGCACGCTGATCTCGGTATTCGAGCTGGCCGGCGATCGCCC
CGACCTCGTCGCCGGGTGGCGACGCAAGCTGAGCATGGCGCTCAACTGA

Upstream 100 bases:

>100_bases
CCGGGCGAGACCGAGTGGATTCCGCTGCCCGAGTCGAAGCCGCGTTGAAAAAGGGGCGCACCGCCCCCATCCTGACGACA
TTCGAACCGAAGAGAACGAC

Downstream 100 bases:

>100_bases
ACTTGATGTGTGACCGCCGGGCCGCAACGGCCCGGCTGCGGGATCGCCCCGCATGCCATACGACGGCGCGTGTCACGCGC
CGCAGCATTCCTTAACGACC

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MDTTLATFEKDVIEASLDAPVLVDFWAPWCGPCKTLGPLLEKLEGDYEGRWKLVKVNVDENQELAAHFQTRSIPHVIAFA
DGRPVDQFVGVLPEGQLRAFLDRLLPAPEEAERRAAQYAMAEERYDDALTHLEAALALNPGFDDARLDLIELLLASNQVD
AARAETERLSPQTLQNGDPRYQAIKTRFDALEATADLPPTDALEARIAANPADLDARFDLAQSLIARRAYEGAVEQLLEI
VTRDRAYGDDLGRRTLISVFELAGDRPDLVAGWRRKLSMALN

Sequences:

>Translated_282_residues
MDTTLATFEKDVIEASLDAPVLVDFWAPWCGPCKTLGPLLEKLEGDYEGRWKLVKVNVDENQELAAHFQTRSIPHVIAFA
DGRPVDQFVGVLPEGQLRAFLDRLLPAPEEAERRAAQYAMAEERYDDALTHLEAALALNPGFDDARLDLIELLLASNQVD
AARAETERLSPQTLQNGDPRYQAIKTRFDALEATADLPPTDALEARIAANPADLDARFDLAQSLIARRAYEGAVEQLLEI
VTRDRAYGDDLGRRTLISVFELAGDRPDLVAGWRRKLSMALN
>Mature_282_residues
MDTTLATFEKDVIEASLDAPVLVDFWAPWCGPCKTLGPLLEKLEGDYEGRWKLVKVNVDENQELAAHFQTRSIPHVIAFA
DGRPVDQFVGVLPEGQLRAFLDRLLPAPEEAERRAAQYAMAEERYDDALTHLEAALALNPGFDDARLDLIELLLASNQVD
AARAETERLSPQTLQNGDPRYQAIKTRFDALEATADLPPTDALEARIAANPADLDARFDLAQSLIARRAYEGAVEQLLEI
VTRDRAYGDDLGRRTLISVFELAGDRPDLVAGWRRKLSMALN

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=98, Percent_Identity=42.8571428571429, Blast_Score=92, Evalue=4e-19,
Organism=Escherichia coli, GI87081747, Length=268, Percent_Identity=34.7014925373134, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI87082331, Length=96, Percent_Identity=41.6666666666667, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788936, Length=88, Percent_Identity=39.7727272727273, Blast_Score=88, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI212646193, Length=100, Percent_Identity=43, Blast_Score=86, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6321648, Length=85, Percent_Identity=38.8235294117647, Blast_Score=66, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28573567, Length=105, Percent_Identity=40, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24664269, Length=85, Percent_Identity=41.1764705882353, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24639826, Length=73, Percent_Identity=39.7260273972603, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21358065, Length=94, Percent_Identity=38.2978723404255, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24639068, Length=96, Percent_Identity=37.5, Blast_Score=71, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 31337; Mature: 31337

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTTLATFEKDVIEASLDAPVLVDFWAPWCGPCKTLGPLLEKLEGDYEGRWKLVKVNVDE
CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCC
NQELAAHFQTRSIPHVIAFADGRPVDQFVGVLPEGQLRAFLDRLLPAPEEAERRAAQYAM
CHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
AEERYDDALTHLEAALALNPGFDDARLDLIELLLASNQVDAARAETERLSPQTLQNGDPR
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCCCHH
YQAIKTRFDALEATADLPPTDALEARIAANPADLDARFDLAQSLIARRAYEGAVEQLLEI
HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VTRDRAYGDDLGRRTLISVFELAGDRPDLVAGWRRKLSMALN
HHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDTTLATFEKDVIEASLDAPVLVDFWAPWCGPCKTLGPLLEKLEGDYEGRWKLVKVNVDE
CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCC
NQELAAHFQTRSIPHVIAFADGRPVDQFVGVLPEGQLRAFLDRLLPAPEEAERRAAQYAM
CHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
AEERYDDALTHLEAALALNPGFDDARLDLIELLLASNQVDAARAETERLSPQTLQNGDPR
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCCCHH
YQAIKTRFDALEATADLPPTDALEARIAANPADLDARFDLAQSLIARRAYEGAVEQLLEI
HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VTRDRAYGDDLGRRTLISVFELAGDRPDLVAGWRRKLSMALN
HHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]