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The map label for this gene is yodF [H]

Identifier: 78067149

GI number: 78067149

Start: 2786470

End: 2788020

Strand: Reverse

Name: yodF [H]

Synonym: Bcep18194_A5680

Alternate gene names: 78067149

Gene position: 2788020-2786470 (Counterclockwise)

Preceding gene: 78067150

Following gene: 78067148

Centisome position: 75.47

GC content: 66.41

Gene sequence:

>1551_bases
ATGAATCTCGGTGCAACCTTCGTCTTCGTCCTGCTGTTCATCGGCGTCACGATCATCGGTTTCCTGGCCGCGAACTGGCG
GCGCGGCGATCTCGCCCATCTCGACGAATGGGGCCTCGGCGGCCGCCGCTTCGGCACGATCGTCACGTGGTTCCTGCTCG
GCGGCGACCTCTACACGGCCTACACGTTCGTCGCGGTGCCCGCGCTCGTGTTCGGCGCCGGTGCGATGGGCTTCTTCGCG
CTGCCGTACACGATCCTGATCTATCCGTTCGCGTTCGTCGTGTTCCCGAAGCTGTGGAGCATCGCGAAGCGGCACGGCTA
CGTGACGGCCGCCGACTTCGTCAACGCGCGCTACGGCAGCCGGATGCTCGCGCTCGCGATCGCGGTGACGGGCATTCTCG
CGACGATGCCGTACATCGCGCTGCAGCTCGTCGGCATCGAAGTGGTGATCGGCGCACTCGGCTTCGACACGACCGGCTTC
GTCGGCGACCTGCCGCTGATCATCGCATTCGCGATCCTCGCCGCGTACACGTACACGTCGGGGCTGCGCGCACCCGCGAT
GATCGCGATCGTCAAGGACATCCTGATCTACATCACGATCGCCGCGGCGGTCATCGTGATCCCGGCGAAGCTCGGCGGCT
TCGGGCACATCTTCGCGAGCGTGCCGCCCGCGAAGCTGCTGCTGAAGGCGCCCGACGCGATGAGCCTGAACGGCTACAGC
GCGTACGCGACGCTCGCGATCGGCTCGGCGCTTGCGCTGTTCCTGTATCCGCACTCGGTGACGGCGATCCTGTCGTCGTC
GTCCGGCAACTCGATCCGCCGCAACATGGCGATGCTGCCCGCGTATTCGTTCGTGCTCGGCCTGCTCGCGCTGCTCGGCT
ACATGGCGCTCGCATCGGGCGTGAAGGACATGCCGCAGTACGCGCCGTACTTCAAGGCGTTCGGCCCGAACTTCGCGGTG
CCCGCACTGTTCCTCGAGTATTTCCCGTCGTGGTTCGTCGGCGTCGCGTTCGCGGCGATCGGCATCGGCGCGCTGGTGCC
GGCGGCCATCATGTCGATCGCGGCCGCGAACCTGTACACGCGCAACATTCACCGCGAGTTCGTGAACCGCAACATGTCGC
ACGAGCAGGAAACGCACGTCGCGAAGCTCGTGTCGCTGATCGTGAAGGTCGGCGCCGTCGCGTTCATCCTCGGGCTGCCA
CTGACCTACGCGATCCAGCTGCAACTGCTCGGCGGGATCTGGATCATCCAGACGCTGCCGGCGATCGTGCTCGGCCTGTA
CACGCGCGTGCTCGACCATCGCGGCCTGCTGGCCGGCTGGGCGGCCGGCATCGTGTGCGGCACGTGGATGGCGATCTCGC
TGAAGCTGGCCGGGTCGATCTTCACGATCCACCTGTTCGGCCTCGCGATCCCCGGCTATGCAGCCGTGTGGTCGCTGATC
GTGAACCTGGTGGTGGCGGTGGTGGTGAGCGTGCTGGTGCGCGTGATGGGCATGGCGCATGCGGAGGATCGCACGCGGCC
GGAGGATTATCTCGACGTCGTCGAGGGCTGA

Upstream 100 bases:

>100_bases
ACCAGCTCCTTTGGGTCTTCATCAGCGCGGTGATCACCGCGTTCGTGTACTTCAAGACCAAGAACGCGTGGAAGGCGAGC
GGCCCGCAGGGAGGTGCGCG

Downstream 100 bases:

>100_bases
TTTCCCCGCCTTCTGTTGCAGTTTCGACACGACGCCCGCGATGCAGATCGCGGGCGTTTTGCATGGTGCGCCGCGAATAC
CGCGTGTGGCCGTGCGCCCG

Product: Na+/solute symporter

Products: Na (I) [Cytoplasm]; pantothenate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MNLGATFVFVLLFIGVTIIGFLAANWRRGDLAHLDEWGLGGRRFGTIVTWFLLGGDLYTAYTFVAVPALVFGAGAMGFFA
LPYTILIYPFAFVVFPKLWSIAKRHGYVTAADFVNARYGSRMLALAIAVTGILATMPYIALQLVGIEVVIGALGFDTTGF
VGDLPLIIAFAILAAYTYTSGLRAPAMIAIVKDILIYITIAAAVIVIPAKLGGFGHIFASVPPAKLLLKAPDAMSLNGYS
AYATLAIGSALALFLYPHSVTAILSSSSGNSIRRNMAMLPAYSFVLGLLALLGYMALASGVKDMPQYAPYFKAFGPNFAV
PALFLEYFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYTRNIHREFVNRNMSHEQETHVAKLVSLIVKVGAVAFILGLP
LTYAIQLQLLGGIWIIQTLPAIVLGLYTRVLDHRGLLAGWAAGIVCGTWMAISLKLAGSIFTIHLFGLAIPGYAAVWSLI
VNLVVAVVVSVLVRVMGMAHAEDRTRPEDYLDVVEG

Sequences:

>Translated_516_residues
MNLGATFVFVLLFIGVTIIGFLAANWRRGDLAHLDEWGLGGRRFGTIVTWFLLGGDLYTAYTFVAVPALVFGAGAMGFFA
LPYTILIYPFAFVVFPKLWSIAKRHGYVTAADFVNARYGSRMLALAIAVTGILATMPYIALQLVGIEVVIGALGFDTTGF
VGDLPLIIAFAILAAYTYTSGLRAPAMIAIVKDILIYITIAAAVIVIPAKLGGFGHIFASVPPAKLLLKAPDAMSLNGYS
AYATLAIGSALALFLYPHSVTAILSSSSGNSIRRNMAMLPAYSFVLGLLALLGYMALASGVKDMPQYAPYFKAFGPNFAV
PALFLEYFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYTRNIHREFVNRNMSHEQETHVAKLVSLIVKVGAVAFILGLP
LTYAIQLQLLGGIWIIQTLPAIVLGLYTRVLDHRGLLAGWAAGIVCGTWMAISLKLAGSIFTIHLFGLAIPGYAAVWSLI
VNLVVAVVVSVLVRVMGMAHAEDRTRPEDYLDVVEG
>Mature_516_residues
MNLGATFVFVLLFIGVTIIGFLAANWRRGDLAHLDEWGLGGRRFGTIVTWFLLGGDLYTAYTFVAVPALVFGAGAMGFFA
LPYTILIYPFAFVVFPKLWSIAKRHGYVTAADFVNARYGSRMLALAIAVTGILATMPYIALQLVGIEVVIGALGFDTTGF
VGDLPLIIAFAILAAYTYTSGLRAPAMIAIVKDILIYITIAAAVIVIPAKLGGFGHIFASVPPAKLLLKAPDAMSLNGYS
AYATLAIGSALALFLYPHSVTAILSSSSGNSIRRNMAMLPAYSFVLGLLALLGYMALASGVKDMPQYAPYFKAFGPNFAV
PALFLEYFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYTRNIHREFVNRNMSHEQETHVAKLVSLIVKVGAVAFILGLP
LTYAIQLQLLGGIWIIQTLPAIVLGLYTRVLDHRGLLAGWAAGIVCGTWMAISLKLAGSIFTIHLFGLAIPGYAAVWSLI
VNLVVAVVVSVLVRVMGMAHAEDRTRPEDYLDVVEG

Specific function: Catalyzes The Sodium-Dependent Uptake Of Extracellular Pantothenate. [C]

COG id: COG0591

COG function: function code ER; Na+/proline symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001734 [H]

Pfam domain/function: PF00474 SSF [H]

EC number: NA

Molecular weight: Translated: 55124; Mature: 55124

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50283 NA_SOLUT_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLGATFVFVLLFIGVTIIGFLAANWRRGDLAHLDEWGLGGRRFGTIVTWFLLGGDLYTA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCHHHHH
YTFVAVPALVFGAGAMGFFALPYTILIYPFAFVVFPKLWSIAKRHGYVTAADFVNARYGS
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHH
RMLALAIAVTGILATMPYIALQLVGIEVVIGALGFDTTGFVGDLPLIIAFAILAAYTYTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC
GLRAPAMIAIVKDILIYITIAAAVIVIPAKLGGFGHIFASVPPAKLLLKAPDAMSLNGYS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHEECCCCCCCCCCH
AYATLAIGSALALFLYPHSVTAILSSSSGNSIRRNMAMLPAYSFVLGLLALLGYMALASG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKDMPQYAPYFKAFGPNFAVPALFLEYFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYT
HHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNIHREFVNRNMSHEQETHVAKLVSLIVKVGAVAFILGLPLTYAIQLQLLGGIWIIQTLP
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
AIVLGLYTRVLDHRGLLAGWAAGIVCGTWMAISLKLAGSIFTIHLFGLAIPGYAAVWSLI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VNLVVAVVVSVLVRVMGMAHAEDRTRPEDYLDVVEG
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; pantothenate [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + pantothenate [Periplasm] = Na (I) [Cytoplasm] + pantothenate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]