| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is ybbP [H]
Identifier: 78067076
GI number: 78067076
Start: 2704299
End: 2706914
Strand: Reverse
Name: ybbP [H]
Synonym: Bcep18194_A5607
Alternate gene names: 78067076
Gene position: 2706914-2704299 (Counterclockwise)
Preceding gene: 78067077
Following gene: 78067075
Centisome position: 73.28
GC content: 71.9
Gene sequence:
>2616_bases TTGAAGGGGCGGCAACACGCGGCGCAGCCGCCGGCCGGGCAACCCGGCCATGAGGTGAGCGCGCATGCCGGCCGCTTCGG CCTGCGCGACCTGATCCGCCAGGCCGCCCGCATGACCGCGCGCGACTGGCGCGCGGGCGAGTTGACGCTGCTCGTCCTTG CCTTGGTGCTCGCGGTCGCGGCGCTGACGAGCGTCGGCTTCCTTGCCGACCGGCTGCGCCAGGGGCTCGAGCGCGACGCG CGCCAGATGCTCGGCGCCGATTTCGTCGTGCGGGCCGATCGCCCCGTCGATCCGTCGTTCGACCAGCAGGCCCGCGCGCT CGGGCTGCGTACCGCGACGACCGCCATCTTCCCGAGCATGATCGCGTCCGCCACGGGCGGGCAGGCGACCGACGCGGCGC CCTCTCGCCTCGCGGCCGTGAAGGCCGTGTCGCCCGGCTATCCGTTGCGCGGCGCGGTCGAGATCCTGCCGGCCGGCGCT GCCGTCGCGCAGAAGGCCGCCGAGATTCCCGCGCCCGGCACCGTATGGGCCGATCCGGCGCTGCTCGATGCGCTGCACCT GAAAGCGGGCGATACGGTGCGTGTCGGACTGCGCACGTTCAAGGTCGCCGCATCGATCTCCCGCGAACTCGATCGCGGCT TTTCCTTCGTCAATTTTTCGCCGCGGTTGATGATGCGCGCCGATGAACTCGCCGCAACGGGGCTCACGGGCTACGGCAGC CGTGTTACGTACCGGCTGCTGGTCGCCGGCGACCAGCAGGCTGTCACACGCTTCGAAGCGTATGCGCACGCACGTGTCGA CGGCGGGAAGCTGCGCGGCGTCGGTCTGGAATCGTTGCAGGAAGGCCAGCCGCAGGTGCGGCAGACGCTGGATCGAGCGC GCCACTTCCTGACGCTCGTCGCACTGCTTACCGCGCTGCTCGCGGCGGTCGCGATTGCGATGGCCGCGCAGCGCTACATG CGGCGCCACCTCGACGGCTGTGCGACGATGCGCTGCCTCGGCGTGAGCCGCCGCACGCTCGGCGCGCTGTTTGCGCTCGA ATTCGCCGGGATCGGGATCGTGTCCGGTGCCGCAGGCGCGGTGCTCGGCTACGGCGGCCACTGGGCGTTGCTGGCCGCGC TCGGTGGCCTGATCGACGTGGTGCTGCCGCCGCCCACGCTGTGGCCGGCGCTGATTGGCGTGGGCGCTGCGCTCGTGCTG CTGCTCGGCTTCGCGCTGCCGCCGCTCGTGCCGCTCACGCGCGTGCCGCCGGTGCGCGTGCTGCGGCGCGAGTGGGGCGA CGCGTCGCGCACCGCATGGGCCGCGTACGCGATCGGCGTCGTGCTGTTCGCGGCGCTGCTGATCGTGGCGGCCGGCAACC TGAAACTCGGGCTGATCGTCGCGGGCGGTTTCGCCGGCGCGCTGGTCGGTTTCGCGCTGATCGCGCGGCTCGTGCTGTTC GCCGCCGCGCGCGCGGTGCGCAATGCGCGCGTGGCTGCGGGCGTCGGCTGGCGCTACGCACTCGCGTCGCTGCACCGGCG CGGCACGGCCAGCGCGCTGCAGATCACCGCACTCGCGCTTGGCCTGATGTGCCTGCTGCTGATCGCGATCACGCGCAACG ACCTCGTCGCGGGCTGGCGTCAGTCGACGCCGCCCGATGCGCCGAATCAGTTCCTGATCGACATCCAGCCCGACCAGCGC GCTGACGTCGCGGCCTACCTGACCGCGCACGGCGTGCGCGACGCGGAGCCCGCGCCGATGGTGCGCGGCCGCCTCGTCGC GATCAACGGCAAGCCGGTGAATCCGGACGCGTACCCGTCCGAGGAGGCGCGCCGGCTCGTCGACCGCGAGTTCAACCTGT CCTATACGACCGAGCTGCCGTCCGACAACCGGATCGTCGAAGGCGACTGGTTCGGCACCGCGGCCACGCCGCAGATCTCG ATCGAGGCCGGCCTCGCGAAGACGCTGAACGTGAAGCCGGGCGACATGCTGCGCTTCGACGTGACGGGGCTGACGGTCGA CGCGCCGATCACGAGCGTGCGCAAGCTCGACTGGGGTTCGTTCCGCGTCAATTTCTTCGTGCTGATGCCGCCGCCGGTGC TGAAGGATTTCCCGGCCGTGTACCTGACGAGCTTCCATTTGCCCGCATCGGATGCCGCGCTGCTCGATCCGCTGATCGCG CGCTACCCGAACCTGACCGCGATCGACGTCGCGCCGATTCTCGCGCAGCTGCAGCGGATGATGCTGCAGGTGGTCGGGGC GGTGCAGTTCCTGTTTGCGTTCACGCTCGCGGCCGGCGTGCTCGTGCTGTACACGGCGCTTGCCGGCACGCGCGACGAGC GGGTGCGCGAGGCCGCGCTGCTGCGCGCGCTCGGCGCGTCGCGCGCGCAGGTCAACGCGGTGCAGCGCGCGGAATTCGTC GTGGTCGGCGCGCTGGCTGGTGCGCTGGCATCGGCGGGCGCGATCGCGGTCGGCTGGGTGCTCGCGTCGCGTGTATTCGA CTTCCAGCTCGCCGTCGATCCGTGGCTGGTGCCGGCCGGCATCGCGGCCGGCATCGTGTGCGCCGGTGCGGCCGGCTGGC TGAGCCTGCATAATGTGCTGCGGCGCCCCGCGCTGCAGTCGCTGCGCGACGCATGA
Upstream 100 bases:
>100_bases CGTGGGCGCTCCCGCGCCTGTGGCGCGGTGTCTCGGGCGGCTTTCGCGGCATGGCGAACCACATGGTGTCGCGGCTCAAC TCGATCGGGGGGAAGCGCGA
Downstream 100 bases:
>100_bases GCGTCGCCGGCAACCCTGAAGCCCCTGTTTTCCGACTATCCGTATGACCGATGTGAATGACGATGCGCCGTCGCAACCCA CGGCGTTCGAGCTCGTGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 871; Mature: 871
Protein sequence:
>871_residues MKGRQHAAQPPAGQPGHEVSAHAGRFGLRDLIRQAARMTARDWRAGELTLLVLALVLAVAALTSVGFLADRLRQGLERDA RQMLGADFVVRADRPVDPSFDQQARALGLRTATTAIFPSMIASATGGQATDAAPSRLAAVKAVSPGYPLRGAVEILPAGA AVAQKAAEIPAPGTVWADPALLDALHLKAGDTVRVGLRTFKVAASISRELDRGFSFVNFSPRLMMRADELAATGLTGYGS RVTYRLLVAGDQQAVTRFEAYAHARVDGGKLRGVGLESLQEGQPQVRQTLDRARHFLTLVALLTALLAAVAIAMAAQRYM RRHLDGCATMRCLGVSRRTLGALFALEFAGIGIVSGAAGAVLGYGGHWALLAALGGLIDVVLPPPTLWPALIGVGAALVL LLGFALPPLVPLTRVPPVRVLRREWGDASRTAWAAYAIGVVLFAALLIVAAGNLKLGLIVAGGFAGALVGFALIARLVLF AAARAVRNARVAAGVGWRYALASLHRRGTASALQITALALGLMCLLLIAITRNDLVAGWRQSTPPDAPNQFLIDIQPDQR ADVAAYLTAHGVRDAEPAPMVRGRLVAINGKPVNPDAYPSEEARRLVDREFNLSYTTELPSDNRIVEGDWFGTAATPQIS IEAGLAKTLNVKPGDMLRFDVTGLTVDAPITSVRKLDWGSFRVNFFVLMPPPVLKDFPAVYLTSFHLPASDAALLDPLIA RYPNLTAIDVAPILAQLQRMMLQVVGAVQFLFAFTLAAGVLVLYTALAGTRDERVREAALLRALGASRAQVNAVQRAEFV VVGALAGALASAGAIAVGWVLASRVFDFQLAVDPWLVPAGIAAGIVCAGAAGWLSLHNVLRRPALQSLRDA
Sequences:
>Translated_871_residues MKGRQHAAQPPAGQPGHEVSAHAGRFGLRDLIRQAARMTARDWRAGELTLLVLALVLAVAALTSVGFLADRLRQGLERDA RQMLGADFVVRADRPVDPSFDQQARALGLRTATTAIFPSMIASATGGQATDAAPSRLAAVKAVSPGYPLRGAVEILPAGA AVAQKAAEIPAPGTVWADPALLDALHLKAGDTVRVGLRTFKVAASISRELDRGFSFVNFSPRLMMRADELAATGLTGYGS RVTYRLLVAGDQQAVTRFEAYAHARVDGGKLRGVGLESLQEGQPQVRQTLDRARHFLTLVALLTALLAAVAIAMAAQRYM RRHLDGCATMRCLGVSRRTLGALFALEFAGIGIVSGAAGAVLGYGGHWALLAALGGLIDVVLPPPTLWPALIGVGAALVL LLGFALPPLVPLTRVPPVRVLRREWGDASRTAWAAYAIGVVLFAALLIVAAGNLKLGLIVAGGFAGALVGFALIARLVLF AAARAVRNARVAAGVGWRYALASLHRRGTASALQITALALGLMCLLLIAITRNDLVAGWRQSTPPDAPNQFLIDIQPDQR ADVAAYLTAHGVRDAEPAPMVRGRLVAINGKPVNPDAYPSEEARRLVDREFNLSYTTELPSDNRIVEGDWFGTAATPQIS IEAGLAKTLNVKPGDMLRFDVTGLTVDAPITSVRKLDWGSFRVNFFVLMPPPVLKDFPAVYLTSFHLPASDAALLDPLIA RYPNLTAIDVAPILAQLQRMMLQVVGAVQFLFAFTLAAGVLVLYTALAGTRDERVREAALLRALGASRAQVNAVQRAEFV VVGALAGALASAGAIAVGWVLASRVFDFQLAVDPWLVPAGIAAGIVCAGAAGWLSLHNVLRRPALQSLRDA >Mature_871_residues MKGRQHAAQPPAGQPGHEVSAHAGRFGLRDLIRQAARMTARDWRAGELTLLVLALVLAVAALTSVGFLADRLRQGLERDA RQMLGADFVVRADRPVDPSFDQQARALGLRTATTAIFPSMIASATGGQATDAAPSRLAAVKAVSPGYPLRGAVEILPAGA AVAQKAAEIPAPGTVWADPALLDALHLKAGDTVRVGLRTFKVAASISRELDRGFSFVNFSPRLMMRADELAATGLTGYGS RVTYRLLVAGDQQAVTRFEAYAHARVDGGKLRGVGLESLQEGQPQVRQTLDRARHFLTLVALLTALLAAVAIAMAAQRYM RRHLDGCATMRCLGVSRRTLGALFALEFAGIGIVSGAAGAVLGYGGHWALLAALGGLIDVVLPPPTLWPALIGVGAALVL LLGFALPPLVPLTRVPPVRVLRREWGDASRTAWAAYAIGVVLFAALLIVAAGNLKLGLIVAGGFAGALVGFALIARLVLF AAARAVRNARVAAGVGWRYALASLHRRGTASALQITALALGLMCLLLIAITRNDLVAGWRQSTPPDAPNQFLIDIQPDQR ADVAAYLTAHGVRDAEPAPMVRGRLVAINGKPVNPDAYPSEEARRLVDREFNLSYTTELPSDNRIVEGDWFGTAATPQIS IEAGLAKTLNVKPGDMLRFDVTGLTVDAPITSVRKLDWGSFRVNFFVLMPPPVLKDFPAVYLTSFHLPASDAALLDPLIA RYPNLTAIDVAPILAQLQRMMLQVVGAVQFLFAFTLAAGVLVLYTALAGTRDERVREAALLRALGASRAQVNAVQRAEFV VVGALAGALASAGAIAVGWVLASRVFDFQLAVDPWLVPAGIAAGIVCAGAAGWLSLHNVLRRPALQSLRDA
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=825, Percent_Identity=31.1515151515152, Blast_Score=321, Evalue=2e-88,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 92039; Mature: 92039
Theoretical pI: Translated: 10.66; Mature: 10.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGRQHAAQPPAGQPGHEVSAHAGRFGLRDLIRQAARMTARDWRAGELTLLVLALVLAVA CCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH ALTSVGFLADRLRQGLERDARQMLGADFVVRADRPVDPSFDQQARALGLRTATTAIFPSM HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH IASATGGQATDAAPSRLAAVKAVSPGYPLRGAVEILPAGAAVAQKAAEIPAPGTVWADPA HHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHEECCCHHHHHHHHCCCCCCCCCCCHH LLDALHLKAGDTVRVGLRTFKVAASISRELDRGFSFVNFSPRLMMRADELAATGLTGYGS HHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCCCCC RVTYRLLVAGDQQAVTRFEAYAHARVDGGKLRGVGLESLQEGQPQVRQTLDRARHFLTLV CEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH ALLTALLAAVAIAMAAQRYMRRHLDGCATMRCLGVSRRTLGALFALEFAGIGIVSGAAGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHCCCCCCH VLGYGGHWALLAALGGLIDVVLPPPTLWPALIGVGAALVLLLGFALPPLVPLTRVPPVRV HCCCCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH LRREWGDASRTAWAAYAIGVVLFAALLIVAAGNLKLGLIVAGGFAGALVGFALIARLVLF HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHH AAARAVRNARVAAGVGWRYALASLHRRGTASALQITALALGLMCLLLIAITRNDLVAGWR HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC QSTPPDAPNQFLIDIQPDQRADVAAYLTAHGVRDAEPAPMVRGRLVAINGKPVNPDAYPS CCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC EEARRLVDREFNLSYTTELPSDNRIVEGDWFGTAATPQISIEAGLAKTLNVKPGDMLRFD HHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCEEEECCCHHCCCCCCCCEEEEE VTGLTVDAPITSVRKLDWGSFRVNFFVLMPPPVLKDFPAVYLTSFHLPASDAALLDPLIA ECCEEECCCHHHHHHCCCCCEEEEEEEEECCHHHHHCCHHHHEEECCCCCCHHHHHHHHH RYPNLTAIDVAPILAQLQRMMLQVVGAVQFLFAFTLAAGVLVLYTALAGTRDERVREAAL HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH LRALGASRAQVNAVQRAEFVVVGALAGALASAGAIAVGWVLASRVFDFQLAVDPWLVPAG HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEECCCCCHHHH IAAGIVCAGAAGWLSLHNVLRRPALQSLRDA HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKGRQHAAQPPAGQPGHEVSAHAGRFGLRDLIRQAARMTARDWRAGELTLLVLALVLAVA CCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH ALTSVGFLADRLRQGLERDARQMLGADFVVRADRPVDPSFDQQARALGLRTATTAIFPSM HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH IASATGGQATDAAPSRLAAVKAVSPGYPLRGAVEILPAGAAVAQKAAEIPAPGTVWADPA HHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHEECCCHHHHHHHHCCCCCCCCCCCHH LLDALHLKAGDTVRVGLRTFKVAASISRELDRGFSFVNFSPRLMMRADELAATGLTGYGS HHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCCCCC RVTYRLLVAGDQQAVTRFEAYAHARVDGGKLRGVGLESLQEGQPQVRQTLDRARHFLTLV CEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH ALLTALLAAVAIAMAAQRYMRRHLDGCATMRCLGVSRRTLGALFALEFAGIGIVSGAAGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHCCCCCCH VLGYGGHWALLAALGGLIDVVLPPPTLWPALIGVGAALVLLLGFALPPLVPLTRVPPVRV HCCCCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH LRREWGDASRTAWAAYAIGVVLFAALLIVAAGNLKLGLIVAGGFAGALVGFALIARLVLF HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHH AAARAVRNARVAAGVGWRYALASLHRRGTASALQITALALGLMCLLLIAITRNDLVAGWR HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC QSTPPDAPNQFLIDIQPDQRADVAAYLTAHGVRDAEPAPMVRGRLVAINGKPVNPDAYPS CCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC EEARRLVDREFNLSYTTELPSDNRIVEGDWFGTAATPQISIEAGLAKTLNVKPGDMLRFD HHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCEEEECCCHHCCCCCCCCEEEEE VTGLTVDAPITSVRKLDWGSFRVNFFVLMPPPVLKDFPAVYLTSFHLPASDAALLDPLIA ECCEEECCCHHHHHHCCCCCEEEEEEEEECCHHHHHCCHHHHEEECCCCCCHHHHHHHHH RYPNLTAIDVAPILAQLQRMMLQVVGAVQFLFAFTLAAGVLVLYTALAGTRDERVREAAL HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH LRALGASRAQVNAVQRAEFVVVGALAGALASAGAIAVGWVLASRVFDFQLAVDPWLVPAG HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEECCCCCHHHH IAAGIVCAGAAGWLSLHNVLRRPALQSLRDA HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]