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The map label for this gene is psd [H]

Identifier: 78067058

GI number: 78067058

Start: 2688104

End: 2688748

Strand: Reverse

Name: psd [H]

Synonym: Bcep18194_A5589

Alternate gene names: 78067058

Gene position: 2688748-2688104 (Counterclockwise)

Preceding gene: 78067059

Following gene: 78067057

Centisome position: 72.78

GC content: 65.58

Gene sequence:

>645_bases
ATGAACTATCCTCATCCGATCATCGCGCGCGAAGGCTGGCCGTTCATCGCGATTGCAGCCGTCATCGCGCTGTTGATCCA
TGCTGTCGGGGGCTTCGGCTTCGCGTGGCCGTTCTGGCTGCTGCTCGTCTTCGTCGTCCAGTTCTTCCGCGATCCGCAGC
GCCCGATCCCGGCGCAGCCGAACGCGGTGCTATGCCCGGCGGACGGCCGCATCGTCGCGGTCGAGACTGCGCAAGACCCG
TACGCGAACCGCGAAGCGCTGAAGATCAGCGTGTTCATGAATGTCTTCAACGTCCATTCGCAGCGTTCGCCGGTCGATGG
CGCGATCTCCAAGGTCGAGTACTTCCCGGGCGCGTTCCTGAACGCGGCGATCGACAAGGCGTCGACCGAGAACGAGCGTA
ACGCGGTCGTGATCCAGACGGCGAGCGGCAAGACCGTGACCGCCGTGCAGATCGCCGGCCTCGTCGCACGCCGGATCCTC
TGCTACGTGCGCGCCGGCGAACCGCTGTCGCGCGGCCAGCGCTACGGTTTCATCCGCTTCGGTTCGCGCGTCGACGTGTA
CCTGCCGCTCGGCAGCCGCGCGAAGGTGTCGATCGGCGAGAAGGTCTACGCGTCGTCGACGATCCTCGCCGAGCTCGAAC
AGTAA

Upstream 100 bases:

>100_bases
ATAGAGGGCCGGTACCAAAAAGCCGCCCGAAGGCAGCAGTGCCCCGGGCGGCTTTTGCTATCCTACGGGCTTTGCAATTC
ACCGAACACAGAACGAATCC

Downstream 100 bases:

>100_bases
GCGGCGGGGCGCACGATGGCCGCATTCAAACCGCGTCGGCCGCGCAACGGCGCCGGCCAGACGCCACGCCCGTTCCGCCG
CAACAAGGTGATGGCACCGG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MNYPHPIIAREGWPFIAIAAVIALLIHAVGGFGFAWPFWLLLVFVVQFFRDPQRPIPAQPNAVLCPADGRIVAVETAQDP
YANREALKISVFMNVFNVHSQRSPVDGAISKVEYFPGAFLNAAIDKASTENERNAVVIQTASGKTVTAVQIAGLVARRIL
CYVRAGEPLSRGQRYGFIRFGSRVDVYLPLGSRAKVSIGEKVYASSTILAELEQ

Sequences:

>Translated_214_residues
MNYPHPIIAREGWPFIAIAAVIALLIHAVGGFGFAWPFWLLLVFVVQFFRDPQRPIPAQPNAVLCPADGRIVAVETAQDP
YANREALKISVFMNVFNVHSQRSPVDGAISKVEYFPGAFLNAAIDKASTENERNAVVIQTASGKTVTAVQIAGLVARRIL
CYVRAGEPLSRGQRYGFIRFGSRVDVYLPLGSRAKVSIGEKVYASSTILAELEQ
>Mature_214_residues
MNYPHPIIAREGWPFIAIAAVIALLIHAVGGFGFAWPFWLLLVFVVQFFRDPQRPIPAQPNAVLCPADGRIVAVETAQDP
YANREALKISVFMNVFNVHSQRSPVDGAISKVEYFPGAFLNAAIDKASTENERNAVVIQTASGKTVTAVQIAGLVARRIL
CYVRAGEPLSRGQRYGFIRFGSRVDVYLPLGSRAKVSIGEKVYASSTILAELEQ

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR004428 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 23430; Mature: 23430

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYPHPIIAREGWPFIAIAAVIALLIHAVGGFGFAWPFWLLLVFVVQFFRDPQRPIPAQP
CCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
NAVLCPADGRIVAVETAQDPYANREALKISVFMNVFNVHSQRSPVDGAISKVEYFPGAFL
CEEEECCCCCEEEEECCCCCCCCCHHEEEEEEHHHHHHCCCCCCCHHHHHHHHHCCCHHH
NAAIDKASTENERNAVVIQTASGKTVTAVQIAGLVARRILCYVRAGEPLSRGQRYGFIRF
HHHHHHCCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEEEE
GSRVDVYLPLGSRAKVSIGEKVYASSTILAELEQ
CCEEEEEEECCCCCEEECCCCHHHCHHHEEEECC
>Mature Secondary Structure
MNYPHPIIAREGWPFIAIAAVIALLIHAVGGFGFAWPFWLLLVFVVQFFRDPQRPIPAQP
CCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
NAVLCPADGRIVAVETAQDPYANREALKISVFMNVFNVHSQRSPVDGAISKVEYFPGAFL
CEEEECCCCCEEEEECCCCCCCCCHHEEEEEEHHHHHHCCCCCCCHHHHHHHHHCCCHHH
NAAIDKASTENERNAVVIQTASGKTVTAVQIAGLVARRILCYVRAGEPLSRGQRYGFIRF
HHHHHHCCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEEEE
GSRVDVYLPLGSRAKVSIGEKVYASSTILAELEQ
CCEEEEEEECCCCCEEECCCCHHHCHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA