Click here to switch to the map view.

The map label for this gene is yciO [H]

Identifier: 78066874

GI number: 78066874

Start: 2472883

End: 2473515

Strand: Reverse

Name: yciO [H]

Synonym: Bcep18194_A5405

Alternate gene names: 78066874

Gene position: 2473515-2472883 (Counterclockwise)

Preceding gene: 78066875

Following gene: 78066873

Centisome position: 66.96

GC content: 67.3

Gene sequence:

>633_bases
ATGTCCCAGTTCTTCAGGATTCACCCGGATAATCCGCAGCCGCGCCTGATCAAGCAGGCCGTGGAAATCGTCAGCAAGGG
CGGCGTGATCGCGATGCCGACCGATTCGAGCTATGCGCTCGCGTGCCATCTCGACGACAAGGACGCGGTCGAGCGCGTGC
GCCGGATTCGCGGCCTCGACGAGAAGCAGCACCTGTCGCTGCTCGTGCGCGACCTGTCGGAGCTCGCCAACTTCGCGATG
GTCGATAACCGCCAGTACCGTCAGATCAAGTCGGTGACACCCGGCCCGTACGTCTTCATCCTGCAGGCGACGAAGGAGGT
GCCGCGCCGGCTGTCGCACCCGTCGCGCAAGACGATCGGGCTGCGCGTGCCCGATCACGCGATCACGCTCGCGTTGCTGG
AATCGCTCGGCCAGCCGCTGCTCGGCACGACGCTGATCCTGCCGCCGGACGACGAGCCGCTCAACGAACCCGAAGAAATC
CGCGAGCGGCTCGAGAAACAGGTCGACCTCGTGATCGACGGCGGCGCATGCCCGCGCGAGCCGTCGACGGTGATCGACCT
GACCGGCGAGGAGCCCGAGCTCGTGCGCGCGGGGCGCGGCGCGCTCGAACCGTTCGGGCTATCGGCGGCGTAA

Upstream 100 bases:

>100_bases
CTGACTCCGGTCTGGGAGCGCTGGCTCTGACACTGGGCGGCGGCCTGCCGTCCGCGTTGCCGTCGGCGCGCATCCGACTT
TTCCCCCTTTACGACTCCCC

Downstream 100 bases:

>100_bases
GCGCGCCGTTCCATTTTTTGCGCGAGTGCGCTTGTTACAATAACGCGATATGGATGCTTCCCTGATACAGACCATCGCCG
TCTACGCACTGCCCGTGATC

Product: Sua5/YciO/YrdC/YwlC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSQFFRIHPDNPQPRLIKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELANFAM
VDNRQYRQIKSVTPGPYVFILQATKEVPRRLSHPSRKTIGLRVPDHAITLALLESLGQPLLGTTLILPPDDEPLNEPEEI
RERLEKQVDLVIDGGACPREPSTVIDLTGEEPELVRAGRGALEPFGLSAA

Sequences:

>Translated_210_residues
MSQFFRIHPDNPQPRLIKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELANFAM
VDNRQYRQIKSVTPGPYVFILQATKEVPRRLSHPSRKTIGLRVPDHAITLALLESLGQPLLGTTLILPPDDEPLNEPEEI
RERLEKQVDLVIDGGACPREPSTVIDLTGEEPELVRAGRGALEPFGLSAA
>Mature_209_residues
SQFFRIHPDNPQPRLIKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELANFAMV
DNRQYRQIKSVTPGPYVFILQATKEVPRRLSHPSRKTIGLRVPDHAITLALLESLGQPLLGTTLILPPDDEPLNEPEEIR
ERLEKQVDLVIDGGACPREPSTVIDLTGEEPELVRAGRGALEPFGLSAA

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=180, Percent_Identity=31.1111111111111, Blast_Score=64, Evalue=7e-11,
Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=58.5365853658537, Blast_Score=246, Evalue=5e-67,
Organism=Escherichia coli, GI2367210, Length=185, Percent_Identity=27.5675675675676, Blast_Score=66, Evalue=2e-12,
Organism=Drosophila melanogaster, GI78707274, Length=194, Percent_Identity=29.8969072164948, Blast_Score=76, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23306; Mature: 23175

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFRIHPDNPQPRLIKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLD
CCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHCCC
EKQHLSLLVRDLSELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVPRRLSHPSRKTIG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEECHHHHHHHHCCCCCCEEE
LRVPDHAITLALLESLGQPLLGTTLILPPDDEPLNEPEEIRERLEKQVDLVIDGGACPRE
EECCHHHHHHHHHHHHCCCHHCCEEEECCCCCCCCCHHHHHHHHHHHEEEEEECCCCCCC
PSTVIDLTGEEPELVRAGRGALEPFGLSAA
CCEEEEECCCCHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQFFRIHPDNPQPRLIKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLD
CCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHCCC
EKQHLSLLVRDLSELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVPRRLSHPSRKTIG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEECHHHHHHHHCCCCCCEEE
LRVPDHAITLALLESLGQPLLGTTLILPPDDEPLNEPEEIRERLEKQVDLVIDGGACPRE
EECCHHHHHHHHHHHHCCCHHCCEEEECCCCCCCCCHHHHHHHHHHHEEEEEECCCCCCC
PSTVIDLTGEEPELVRAGRGALEPFGLSAA
CCEEEEECCCCHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]