| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is 78066821
Identifier: 78066821
GI number: 78066821
Start: 2412050
End: 2413060
Strand: Reverse
Name: 78066821
Synonym: Bcep18194_A5352
Alternate gene names: NA
Gene position: 2413060-2412050 (Counterclockwise)
Preceding gene: 78066822
Following gene: 78066820
Centisome position: 65.32
GC content: 70.13
Gene sequence:
>1011_bases ATGGCATGGGCTGAAGCGGCGCTCGAGGAAATGGGCCTCGCGCAGATCTGGGTGCGGCGCGGGAAAGGCGCGGAGGCGGG CACGGACGAGGACGCGGCAGCCGAAGCGCACGCCGCACCGGCCGTCACGGCCGAACGACCTGCGCGGATCGCACGTACAC CGGTACAGGATGAGGCGCCGCCGGCAGTGGCGCGAAGCGTCGATGCTTCACCGGCTCGCGAGCCGGCCGCCGCCCCGTCG CGCCGCGTCGATGACGGCGATCGCGCGCCAGCACCGGCCACACCGGTCGCGTCGACCGACACGATGCCGCCAATGGACGA CATGCCGCCTGCCGGACCCGACGATTTCGCGTGGTTCGATGCGGCGCCGCCGGGTGATCCCGTGCCGGTGGCCGAATCGC GCCCCGTCGGTACGCCGGTTGCCGCGCTCGACTGGGACGCGCTGGCCGCGCGCGTGTCGGACTGTACACTTTGCCGGCTG TGCGAGAAGCGGACCAACACCGTGTTTGGCGTCGGCGACCGTGAAGCAGACTGGATGCTGATCGGCGAAGCGCCGGGCGA GAACGAGGACAAGCAGGGCGAGCCGTTCGTCGGCCAGGCCGGCAAGCTGCTCGACAACATGCTGCAGTCGCTGTCGCTCA AGCGCGGCGATAACGTGTACATCGCGAACGTGATCAAGTGTCGCCCGCCCGGCAACCGCAATCCGGAGCCGGACGAGGTC GCGAGTTGCGAGCCCTATCTGCAGCGCCAGGTCGCGCTCGTGAAGCCGAAGCTGATCGTCGCGCTCGGCCGCTTCGCCGC GCAGACGCTGCTGAAGACGGACGCGAGCATTGCGTCGCTGCGCGGCCGCGTGCATGCGTACGAAGGCGTGCCGGTGATCG TGACCTACCACCCGGCGTACCTGCTGCGCAGCCTGCAGGACAAGTCGAAGGCATGGGCCGACCTGTGCCTCGCGCGCGAT ACGTTCCAGCGTGCCGAGGGCGCCGACGCGAACGGACCGGCCGGACAATGA
Upstream 100 bases:
>100_bases ACGATCGGCCGGCGCAAGAATTATTACCCGGCGAAGCATCGCAGCCGGGAGGACGCAATCGTGATGCGTCTGACGTTGAA CAAGGACGAAGGGGACGCGC
Downstream 100 bases:
>100_bases CGACCGGCGCGGCGTTCGCATTCGTCGATACGCTGCACGACGTCGCGGTTCGGGATCTGGGCTGGCTGCTGGCCAGCCCG AGCCTGCTCACCGCGGTGCC
Product: Phage SPO1 DNA polymerase-related protein
Products: NA
Alternate protein names: Uracil-DNA Glycosylase; Phage SPO1 DNA Polymerase-Like Protein; DNA Polymerase; DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily Protein; DNA-Directed DNA Polymerase; Phage Spo1 DNA Polymerase-Related Protein; DNA Polymerase-Related Protein Bacteriophage-Type; Uracil-DNA Glycosylase Family 4 Protein; DNA Polymerase-Related Protein; DNA Glycosylase; Bacteriophage-Related DNA Polymerase; N-Terminus Of Bacteriophage-Type DNA Polymerase; Phage SPO1 DNA Polymerase Domain-Containing Protein; Uracil-DNA Glycosylase Phage-Related Protein; Uracil-DNA Glycosylase Superfamily Protein; Phage Shock Protein E; DNA Polymerase Domain-Containing Protein; C-Terminal Part Of DNA Polymerase Bacteriophage-Type; Phage DNA Polymerase; Phage Spo1 DNA Polymerase Domain Protein; Phage Related DNA Polymerase; Uracil-DNA Glycosylase-Like Protein; Uracil-DNA Glycosylase C-Terminal; Uracil-DNA Glycosylase-Related Protein; Phage SpO1 DNA Polymerase-Related Protein; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein; N-Terminus Of Phage SPO1 DNA Polymerase; Arginine Biosynthesis Bifunctional Protein ArgJ; Bacteriophage-Type DNA Polymerase; Uracil DNA Glycosylase; Phage DNA Polymerase-Related Protein; DNA-Directed DNA Polymerase Bacteriophage-Type
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MAWAEAALEEMGLAQIWVRRGKGAEAGTDEDAAAEAHAAPAVTAERPARIARTPVQDEAPPAVARSVDASPAREPAAAPS RRVDDGDRAPAPATPVASTDTMPPMDDMPPAGPDDFAWFDAAPPGDPVPVAESRPVGTPVAALDWDALAARVSDCTLCRL CEKRTNTVFGVGDREADWMLIGEAPGENEDKQGEPFVGQAGKLLDNMLQSLSLKRGDNVYIANVIKCRPPGNRNPEPDEV ASCEPYLQRQVALVKPKLIVALGRFAAQTLLKTDASIASLRGRVHAYEGVPVIVTYHPAYLLRSLQDKSKAWADLCLARD TFQRAEGADANGPAGQ
Sequences:
>Translated_336_residues MAWAEAALEEMGLAQIWVRRGKGAEAGTDEDAAAEAHAAPAVTAERPARIARTPVQDEAPPAVARSVDASPAREPAAAPS RRVDDGDRAPAPATPVASTDTMPPMDDMPPAGPDDFAWFDAAPPGDPVPVAESRPVGTPVAALDWDALAARVSDCTLCRL CEKRTNTVFGVGDREADWMLIGEAPGENEDKQGEPFVGQAGKLLDNMLQSLSLKRGDNVYIANVIKCRPPGNRNPEPDEV ASCEPYLQRQVALVKPKLIVALGRFAAQTLLKTDASIASLRGRVHAYEGVPVIVTYHPAYLLRSLQDKSKAWADLCLARD TFQRAEGADANGPAGQ >Mature_335_residues AWAEAALEEMGLAQIWVRRGKGAEAGTDEDAAAEAHAAPAVTAERPARIARTPVQDEAPPAVARSVDASPAREPAAAPSR RVDDGDRAPAPATPVASTDTMPPMDDMPPAGPDDFAWFDAAPPGDPVPVAESRPVGTPVAALDWDALAARVSDCTLCRLC EKRTNTVFGVGDREADWMLIGEAPGENEDKQGEPFVGQAGKLLDNMLQSLSLKRGDNVYIANVIKCRPPGNRNPEPDEVA SCEPYLQRQVALVKPKLIVALGRFAAQTLLKTDASIASLRGRVHAYEGVPVIVTYHPAYLLRSLQDKSKAWADLCLARDT FQRAEGADANGPAGQ
Specific function: Unknown
COG id: COG1573
COG function: function code L; Uracil-DNA glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35711; Mature: 35580
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWAEAALEEMGLAQIWVRRGKGAEAGTDEDAAAEAHAAPAVTAERPARIARTPVQDEAP CCHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHCCCCCCCCC PAVARSVDASPAREPAAAPSRRVDDGDRAPAPATPVASTDTMPPMDDMPPAGPDDFAWFD CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC AAPPGDPVPVAESRPVGTPVAALDWDALAARVSDCTLCRLCEKRTNTVFGVGDREADWML CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEE IGEAPGENEDKQGEPFVGQAGKLLDNMLQSLSLKRGDNVYIANVIKCRPPGNRNPEPDEV EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCHHH ASCEPYLQRQVALVKPKLIVALGRFAAQTLLKTDASIASLRGRVHAYEGVPVIVTYHPAY CCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCEEEEEECHHH LLRSLQDKSKAWADLCLARDTFQRAEGADANGPAGQ HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure AWAEAALEEMGLAQIWVRRGKGAEAGTDEDAAAEAHAAPAVTAERPARIARTPVQDEAP CHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHCCCCCCCCC PAVARSVDASPAREPAAAPSRRVDDGDRAPAPATPVASTDTMPPMDDMPPAGPDDFAWFD CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC AAPPGDPVPVAESRPVGTPVAALDWDALAARVSDCTLCRLCEKRTNTVFGVGDREADWML CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEE IGEAPGENEDKQGEPFVGQAGKLLDNMLQSLSLKRGDNVYIANVIKCRPPGNRNPEPDEV EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCHHH ASCEPYLQRQVALVKPKLIVALGRFAAQTLLKTDASIASLRGRVHAYEGVPVIVTYHPAY CCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCEEEEEECHHH LLRSLQDKSKAWADLCLARDTFQRAEGADANGPAGQ HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA