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The map label for this gene is arnB [H]

Identifier: 78066629

GI number: 78066629

Start: 2206672

End: 2207886

Strand: Direct

Name: arnB [H]

Synonym: Bcep18194_A5160

Alternate gene names: 78066629

Gene position: 2206672-2207886 (Clockwise)

Preceding gene: 78066628

Following gene: 78066630

Centisome position: 59.73

GC content: 65.27

Gene sequence:

>1215_bases
ATGCCGGTTTCGGCCGGGATCGCCCGACCCTTTTATTACACGCCATTACAGGCCAACGCGTTCATGAGCCAGACTACCGC
TCCGTTTCTGCCGTTCACCCGCCCCGAGATCGATGAGGAAACCATCCAGGGCGTCGTCGAAGTGCTGCGCTCGGGCTGGA
TCACCACCGGCCCGCAGAGCCAGAAATTCGAAGCGGCGCTGTCCGAGTACTGCGGCGGCCGTCCGGTCCGCGCGTTCAAC
TCGGGCACCTGCACGCTCGAGATCGGCCTGCGCATCGCGGGCGTCGGTGCCGGCGACGAGGTGATCACAACGCCGGCGTC
GTGGGTCTCGACCAGCAACGTGATCATCGAGACCGGCGCGACGCCCGTGTTCGCCGACATCGATCCTGTCACGCGCAACA
TCGACCTCGACAAGCTCGAGCAGGCGATCACGCCGCGCACGAAGGCGATCATCCCCGTGTTCCTGTCCGGCCTGCCGGTC
GACATGGACCGTCTGTACGCGATCGCACGCGCGCACAAGCTGCGCGTGATCGAGGATGCGGCGCAGGCATTCGGCTCGAC
GTGGAACGGCAAGCGCATCGGCGCGATCGGCGACATCGTGTCGTTCAGCTTCCACGCGAACAAGAACCTGACGACGATCG
AAGGCGGCGCACTCGTGCTGAACAACGAGGAAGAAGCGACGCTCGCGCAGAAGTACCGGCTGCAGGGCATCACGCGCACG
GGCTTCGACGGGATGGACTGCGACGTGCTCGGCGGCAAGTACAACCTGACCGACGTCGCCGCACGTGTCGGCCTCGGCCA
GCTGCCGCACATCGACCGCTTCACCGCGCAGCGCCGCGCGCTCGCACGGGCGTATTTCGCCGCGTTCGACGGCAGCGCGG
CCGTGAAGCTCGGCGTCGGCCTGCCGGTTGCCGACTTCGAGAACAGCAACTGGCACATGTTCCTGATCACGCTGCCGCTC
GAGCGGCTGACGATCACGCGCGCCGAATTCATGGCGCAACTGAAGGAACGCGGCATCGGCACGGGCATCCACTACCCGGC
GATCCATCTTTTCACGCTGTACCGTGCGCGCGGCTTCAAGGAGGGCATGTTCCCCCACGCCGAACGGTACGGCGCGTCGA
CCGTCACGCTGCCGCTCTTCACGCAGATGACGGAAGGCGACGTGCGTCGCGTAGTCGACGCCATCAACCAGATTTGCGAA
CAATACGGAAAATAA

Upstream 100 bases:

>100_bases
TCGGCGTGCTGGTGCTCGCACGCAGCTGAGCCGGCCCCGCCGCGCGCATTAAGCGTCCGCCTACAAAAAATCACGGTGCG
ATTCCGCCAACCGGTGTTTA

Downstream 100 bases:

>100_bases
GCGTACATGAGTCACCTTGAAGCACGCGCCGGGCATCCGGTCGCCGGGCAGCCCGAAGTTTCGGTCATCATCCCCGTGTA
CAACGAGGAAGACGGCCTCG

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase; UDP-Ara4O aminotransferase; UDP-4-amino-4-deoxy-L-arabinose aminotransferase [H]

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MPVSAGIARPFYYTPLQANAFMSQTTAPFLPFTRPEIDEETIQGVVEVLRSGWITTGPQSQKFEAALSEYCGGRPVRAFN
SGTCTLEIGLRIAGVGAGDEVITTPASWVSTSNVIIETGATPVFADIDPVTRNIDLDKLEQAITPRTKAIIPVFLSGLPV
DMDRLYAIARAHKLRVIEDAAQAFGSTWNGKRIGAIGDIVSFSFHANKNLTTIEGGALVLNNEEEATLAQKYRLQGITRT
GFDGMDCDVLGGKYNLTDVAARVGLGQLPHIDRFTAQRRALARAYFAAFDGSAAVKLGVGLPVADFENSNWHMFLITLPL
ERLTITRAEFMAQLKERGIGTGIHYPAIHLFTLYRARGFKEGMFPHAERYGASTVTLPLFTQMTEGDVRRVVDAINQICE
QYGK

Sequences:

>Translated_404_residues
MPVSAGIARPFYYTPLQANAFMSQTTAPFLPFTRPEIDEETIQGVVEVLRSGWITTGPQSQKFEAALSEYCGGRPVRAFN
SGTCTLEIGLRIAGVGAGDEVITTPASWVSTSNVIIETGATPVFADIDPVTRNIDLDKLEQAITPRTKAIIPVFLSGLPV
DMDRLYAIARAHKLRVIEDAAQAFGSTWNGKRIGAIGDIVSFSFHANKNLTTIEGGALVLNNEEEATLAQKYRLQGITRT
GFDGMDCDVLGGKYNLTDVAARVGLGQLPHIDRFTAQRRALARAYFAAFDGSAAVKLGVGLPVADFENSNWHMFLITLPL
ERLTITRAEFMAQLKERGIGTGIHYPAIHLFTLYRARGFKEGMFPHAERYGASTVTLPLFTQMTEGDVRRVVDAINQICE
QYGK
>Mature_403_residues
PVSAGIARPFYYTPLQANAFMSQTTAPFLPFTRPEIDEETIQGVVEVLRSGWITTGPQSQKFEAALSEYCGGRPVRAFNS
GTCTLEIGLRIAGVGAGDEVITTPASWVSTSNVIIETGATPVFADIDPVTRNIDLDKLEQAITPRTKAIIPVFLSGLPVD
MDRLYAIARAHKLRVIEDAAQAFGSTWNGKRIGAIGDIVSFSFHANKNLTTIEGGALVLNNEEEATLAQKYRLQGITRTG
FDGMDCDVLGGKYNLTDVAARVGLGQLPHIDRFTAQRRALARAYFAAFDGSAAVKLGVGLPVADFENSNWHMFLITLPLE
RLTITRAEFMAQLKERGIGTGIHYPAIHLFTLYRARGFKEGMFPHAERYGASTVTLPLFTQMTEGDVRRVVDAINQICEQ
YGK

Specific function: Catalyzes the conversion of UDP-4-keto-arabinose (UDP- Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family. ArnB subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=384, Percent_Identity=41.40625, Blast_Score=258, Evalue=6e-70,
Organism=Escherichia coli, GI2367285, Length=373, Percent_Identity=32.171581769437, Blast_Score=157, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022850
- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: =2.6.1.87 [H]

Molecular weight: Translated: 44140; Mature: 44009

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVSAGIARPFYYTPLQANAFMSQTTAPFLPFTRPEIDEETIQGVVEVLRSGWITTGPQS
CCCCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
QKFEAALSEYCGGRPVRAFNSGTCTLEIGLRIAGVGAGDEVITTPASWVSTSNVIIETGA
HHHHHHHHHHCCCCCEEEECCCEEEEEEEEEEEECCCCCCEEECCHHHHCCCCEEEECCC
TPVFADIDPVTRNIDLDKLEQAITPRTKAIIPVFLSGLPVDMDRLYAIARAHKLRVIEDA
CCEEECCCCHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
AQAFGSTWNGKRIGAIGDIVSFSFHANKNLTTIEGGALVLNNEEEATLAQKYRLQGITRT
HHHCCCCCCCCCCCCHHHHHEEEEECCCCCEEECCCEEEECCCHHHHHHHHHHHCCCCCC
GFDGMDCDVLGGKYNLTDVAARVGLGQLPHIDRFTAQRRALARAYFAAFDGSAAVKLGVG
CCCCCCEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC
LPVADFENSNWHMFLITLPLERLTITRAEFMAQLKERGIGTGIHYPAIHLFTLYRARGFK
CCEECCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
EGMFPHAERYGASTVTLPLFTQMTEGDVRRVVDAINQICEQYGK
CCCCCCHHHCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PVSAGIARPFYYTPLQANAFMSQTTAPFLPFTRPEIDEETIQGVVEVLRSGWITTGPQS
CCCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
QKFEAALSEYCGGRPVRAFNSGTCTLEIGLRIAGVGAGDEVITTPASWVSTSNVIIETGA
HHHHHHHHHHCCCCCEEEECCCEEEEEEEEEEEECCCCCCEEECCHHHHCCCCEEEECCC
TPVFADIDPVTRNIDLDKLEQAITPRTKAIIPVFLSGLPVDMDRLYAIARAHKLRVIEDA
CCEEECCCCHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
AQAFGSTWNGKRIGAIGDIVSFSFHANKNLTTIEGGALVLNNEEEATLAQKYRLQGITRT
HHHCCCCCCCCCCCCHHHHHEEEEECCCCCEEECCCEEEECCCHHHHHHHHHHHCCCCCC
GFDGMDCDVLGGKYNLTDVAARVGLGQLPHIDRFTAQRRALARAYFAAFDGSAAVKLGVG
CCCCCCEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC
LPVADFENSNWHMFLITLPLERLTITRAEFMAQLKERGIGTGIHYPAIHLFTLYRARGFK
CCEECCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
EGMFPHAERYGASTVTLPLFTQMTEGDVRRVVDAINQICEQYGK
CCCCCCHHHCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA