Click here to switch to the map view.

The map label for this gene is exbD1 [H]

Identifier: 78066474

GI number: 78066474

Start: 2043129

End: 2043560

Strand: Reverse

Name: exbD1 [H]

Synonym: Bcep18194_A5005

Alternate gene names: 78066474

Gene position: 2043560-2043129 (Counterclockwise)

Preceding gene: 78066475

Following gene: 78066473

Centisome position: 55.32

GC content: 62.5

Gene sequence:

>432_bases
ATGGGAATGAATGTGCCTTCGGGCGGGAGCAATGCCGAACCGGAAGTGATGGTCGACATCAACACGACGCCGCTGATCGA
CGTGATGCTGGTGTTGCTGATCATGCTGATCATCACGATCCCGATTCAGATGCATTCGGTAAAGATGGACCTGCCGGTGG
GGAATCCGCCGCCGCCGGCCACGCCGCCGGAAATCGTGCAGATCGATATCGACTTCGACGGCACGACGACATGGAACGGC
GCACCGGTGCCGGACCGCGCGGCGCTCGAGTCGAAACTGACCCAGGTGGCGGCGGAGCCCGTGCAGGCCGAGATCCATCT
GCGCCCCAACAAGCTGGTGCCGTACAAGGACGTGGCCGCCGTGCTCGCATCCGCGCAACGCGTGGGCGCGACCAAGATCG
GCCTGATCGGTAACGAACAGTTCATGCAATGA

Upstream 100 bases:

>100_bases
GGGGCCGGCGGCAAGTGTTGGCGCGCTGACGCTGGTTGACCGAGAACGGTGGGATCGGCGTAAGTGCTCAGGCACTAACG
CAGGTCGACAGGAGTCAACG

Downstream 100 bases:

>100_bases
CGACACGGACGAGCCGATGAACCAGCGACGATGGAAACGGATGATGGCGGTGACGGCGCTCGGCGCGGCAGGCCTGCTCG
GTCGCCCGGCGCTGCCGGCG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MGMNVPSGGSNAEPEVMVDINTTPLIDVMLVLLIMLIITIPIQMHSVKMDLPVGNPPPPATPPEIVQIDIDFDGTTTWNG
APVPDRAALESKLTQVAAEPVQAEIHLRPNKLVPYKDVAAVLASAQRVGATKIGLIGNEQFMQ

Sequences:

>Translated_143_residues
MGMNVPSGGSNAEPEVMVDINTTPLIDVMLVLLIMLIITIPIQMHSVKMDLPVGNPPPPATPPEIVQIDIDFDGTTTWNG
APVPDRAALESKLTQVAAEPVQAEIHLRPNKLVPYKDVAAVLASAQRVGATKIGLIGNEQFMQ
>Mature_142_residues
GMNVPSGGSNAEPEVMVDINTTPLIDVMLVLLIMLIITIPIQMHSVKMDLPVGNPPPPATPPEIVQIDIDFDGTTTWNGA
PVPDRAALESKLTQVAAEPVQAEIHLRPNKLVPYKDVAAVLASAQRVGATKIGLIGNEQFMQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=123, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15268; Mature: 15137

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMNVPSGGSNAEPEVMVDINTTPLIDVMLVLLIMLIITIPIQMHSVKMDLPVGNPPPPA
CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC
TPPEIVQIDIDFDGTTTWNGAPVPDRAALESKLTQVAAEPVQAEIHLRPNKLVPYKDVAA
CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHH
VLASAQRVGATKIGLIGNEQFMQ
HHHHHHHCCCEEEEEECCHHHCC
>Mature Secondary Structure 
GMNVPSGGSNAEPEVMVDINTTPLIDVMLVLLIMLIITIPIQMHSVKMDLPVGNPPPPA
CCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC
TPPEIVQIDIDFDGTTTWNGAPVPDRAALESKLTQVAAEPVQAEIHLRPNKLVPYKDVAA
CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHH
VLASAQRVGATKIGLIGNEQFMQ
HHHHHHHCCCEEEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]