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The map label for this gene is yfdE [H]

Identifier: 78066322

GI number: 78066322

Start: 1869958

End: 1871148

Strand: Direct

Name: yfdE [H]

Synonym: Bcep18194_A4852

Alternate gene names: 78066322

Gene position: 1869958-1871148 (Clockwise)

Preceding gene: 78066320

Following gene: 78066323

Centisome position: 50.62

GC content: 71.37

Gene sequence:

>1191_bases
ATGACACGCCCCCTGGACGGCATCCGCGTACTGGAACTCGGCCAACTGATCGCCGGGCCGTTCGCGGGCCGGATGCTCGC
CGAATTCGGCGCCGACGTGCTCAAGGTCGAGCCGCCCGGGCTCGGCGACCCGCTGCGCAAATGGCGGTTGCTGCACGACG
GCACGTCGGTCTGGTGGGCCGCGCAGTCGCGCAACAAGACCTCGCTCACGCTCGACCTGCGCACGCCCGAAGGGCAGGAC
GTCGTGCGCCGCCTCGTCGCGGAAACCGACGTGCTGATCGAGAACTTCCGCCCCGGCACGCTCGAAGGCTGGGGGCTCGG
CTGGGACGCGCTGTCCGCGATCAATCCGGGGCTCGTGATGCTGCGCGTGTCGGGCTTCGGCCAGACGGGCCCGTACCGCG
ACCGCCCCGGCTTCGGCGTGATCGCCGAGGCGATGGGCGGCCTGCGGCATCTGACCGGCGAGCCCGGCCGCACGCCGGTG
CGCGTCGGCATCTCGCTCGGCGATTCGCTGTCGGCACTGCACGGCGTGATCGGCGTGCTGCTCGCGCTGCGGCATCGCGA
ACAGCAGGGCGGCAAGGGGCAGGTCGTCGACGTCGCGCTGTACGAGTCGGTGTTCAACATGATGGAAAGCCTGCTGCCCG
AATACTCGGCGTTCGGCGCCGTGCGCGAGGCGGCCGGCAGCAGCCTGCCCGGCATCGCACCGACCAACGCATACCGCTGC
CGCGACGGCAAGTACGCGCTGATCGCCGGCAACGGCGACAGCATCTTCCGCCGCCTGATGGAGCTGATCGGCCGGCCCGA
TCTCGGCAACGATCCCGCGCTCGCGCACAACGACGGGCGCGTCGCGCAGGTCGAACGCATCGACGCGGCGATCGGCGCGT
GGAGCGCGCAGCACGATCTCGACGCCGTGCTGGCCGCGCTGAACGAAGCGCGCATCCCGTCAGGACGCATCTACGACGTG
GCCGACATCGCGGCCGATCCGCATTACCGCGCACGCGACATGCTCGTCGATGCCGCGTTGCCAGACGGCACGCCGGTACT
CGTGCCCGGCATCGTGCCGAAGCTCGGCGCGACGCCCGGCCGCATCGAACACGCGGCACCCGCGCTCGGCGCGGATACCG
ACGCGGTACTCGAATCGCTCGGCATCGATGCGGCGACGCGCGGCGACTGGCGCACGCGCGGCGTGATCTGA

Upstream 100 bases:

>100_bases
TCCGTTTCGGAAAGGCTGGTTGAGCATCGATCGATTTTCGCCGGGCGCGAACGCGCTCATGATCGCCGTCATCGACAACA
CGATTTCATCGGAGACAGCC

Downstream 100 bases:

>100_bases
CAAGCGGAACAGGAGAAGACAACATGAGCGGGCAACAACGCAAACGGCTCTACATCCACGAAGTCGCGACGCGCGACGGC
TTCCAGAACGAAGCGGCGTT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MTRPLDGIRVLELGQLIAGPFAGRMLAEFGADVLKVEPPGLGDPLRKWRLLHDGTSVWWAAQSRNKTSLTLDLRTPEGQD
VVRRLVAETDVLIENFRPGTLEGWGLGWDALSAINPGLVMLRVSGFGQTGPYRDRPGFGVIAEAMGGLRHLTGEPGRTPV
RVGISLGDSLSALHGVIGVLLALRHREQQGGKGQVVDVALYESVFNMMESLLPEYSAFGAVREAAGSSLPGIAPTNAYRC
RDGKYALIAGNGDSIFRRLMELIGRPDLGNDPALAHNDGRVAQVERIDAAIGAWSAQHDLDAVLAALNEARIPSGRIYDV
ADIAADPHYRARDMLVDAALPDGTPVLVPGIVPKLGATPGRIEHAAPALGADTDAVLESLGIDAATRGDWRTRGVI

Sequences:

>Translated_396_residues
MTRPLDGIRVLELGQLIAGPFAGRMLAEFGADVLKVEPPGLGDPLRKWRLLHDGTSVWWAAQSRNKTSLTLDLRTPEGQD
VVRRLVAETDVLIENFRPGTLEGWGLGWDALSAINPGLVMLRVSGFGQTGPYRDRPGFGVIAEAMGGLRHLTGEPGRTPV
RVGISLGDSLSALHGVIGVLLALRHREQQGGKGQVVDVALYESVFNMMESLLPEYSAFGAVREAAGSSLPGIAPTNAYRC
RDGKYALIAGNGDSIFRRLMELIGRPDLGNDPALAHNDGRVAQVERIDAAIGAWSAQHDLDAVLAALNEARIPSGRIYDV
ADIAADPHYRARDMLVDAALPDGTPVLVPGIVPKLGATPGRIEHAAPALGADTDAVLESLGIDAATRGDWRTRGVI
>Mature_395_residues
TRPLDGIRVLELGQLIAGPFAGRMLAEFGADVLKVEPPGLGDPLRKWRLLHDGTSVWWAAQSRNKTSLTLDLRTPEGQDV
VRRLVAETDVLIENFRPGTLEGWGLGWDALSAINPGLVMLRVSGFGQTGPYRDRPGFGVIAEAMGGLRHLTGEPGRTPVR
VGISLGDSLSALHGVIGVLLALRHREQQGGKGQVVDVALYESVFNMMESLLPEYSAFGAVREAAGSSLPGIAPTNAYRCR
DGKYALIAGNGDSIFRRLMELIGRPDLGNDPALAHNDGRVAQVERIDAAIGAWSAQHDLDAVLAALNEARIPSGRIYDVA
DIAADPHYRARDMLVDAALPDGTPVLVPGIVPKLGATPGRIEHAAPALGADTDAVLESLGIDAATRGDWRTRGVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=398, Percent_Identity=28.643216080402, Blast_Score=184, Evalue=1e-46,
Organism=Homo sapiens, GI300863124, Length=327, Percent_Identity=29.6636085626911, Blast_Score=175, Evalue=8e-44,
Organism=Homo sapiens, GI300863126, Length=398, Percent_Identity=26.1306532663317, Blast_Score=146, Evalue=3e-35,
Organism=Homo sapiens, GI13376042, Length=327, Percent_Identity=25.3822629969419, Blast_Score=125, Evalue=9e-29,
Organism=Homo sapiens, GI266456254, Length=381, Percent_Identity=27.2965879265092, Blast_Score=109, Evalue=5e-24,
Organism=Homo sapiens, GI42794625, Length=381, Percent_Identity=27.2965879265092, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI266458393, Length=263, Percent_Identity=33.0798479087452, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI266458397, Length=260, Percent_Identity=33.0769230769231, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=39.7260273972603, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=39.7260273972603, Blast_Score=90, Evalue=4e-18,
Organism=Escherichia coli, GI87082093, Length=350, Percent_Identity=33.1428571428571, Blast_Score=208, Evalue=4e-55,
Organism=Escherichia coli, GI1788717, Length=403, Percent_Identity=31.2655086848635, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI1786222, Length=401, Percent_Identity=28.1795511221945, Blast_Score=147, Evalue=9e-37,
Organism=Caenorhabditis elegans, GI115535051, Length=267, Percent_Identity=29.9625468164794, Blast_Score=108, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI32564160, Length=267, Percent_Identity=30.7116104868914, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24648431, Length=382, Percent_Identity=31.6753926701571, Blast_Score=188, Evalue=4e-48,
Organism=Drosophila melanogaster, GI24585488, Length=363, Percent_Identity=30.3030303030303, Blast_Score=121, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42160; Mature: 42028

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPLDGIRVLELGQLIAGPFAGRMLAEFGADVLKVEPPGLGDPLRKWRLLHDGTSVWWA
CCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEE
AQSRNKTSLTLDLRTPEGQDVVRRLVAETDVLIENFRPGTLEGWGLGWDALSAINPGLVM
ECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEE
LRVSGFGQTGPYRDRPGFGVIAEAMGGLRHLTGEPGRTPVRVGISLGDSLSALHGVIGVL
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
LALRHREQQGGKGQVVDVALYESVFNMMESLLPEYSAFGAVREAAGSSLPGIAPTNAYRC
HHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
RDGKYALIAGNGDSIFRRLMELIGRPDLGNDPALAHNDGRVAQVERIDAAIGAWSAQHDL
CCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCEECCCCCEEHHHHHHHHHHCCCCHHHH
DAVLAALNEARIPSGRIYDVADIAADPHYRARDMLVDAALPDGTPVLVPGIVPKLGATPG
HHHHHHHHHHCCCCCCEEEHHHHCCCCCCHHHHHEEECCCCCCCEEEECCCCHHCCCCCC
RIEHAAPALGADTDAVLESLGIDAATRGDWRTRGVI
CCHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TRPLDGIRVLELGQLIAGPFAGRMLAEFGADVLKVEPPGLGDPLRKWRLLHDGTSVWWA
CCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEE
AQSRNKTSLTLDLRTPEGQDVVRRLVAETDVLIENFRPGTLEGWGLGWDALSAINPGLVM
ECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEE
LRVSGFGQTGPYRDRPGFGVIAEAMGGLRHLTGEPGRTPVRVGISLGDSLSALHGVIGVL
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
LALRHREQQGGKGQVVDVALYESVFNMMESLLPEYSAFGAVREAAGSSLPGIAPTNAYRC
HHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
RDGKYALIAGNGDSIFRRLMELIGRPDLGNDPALAHNDGRVAQVERIDAAIGAWSAQHDL
CCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCEECCCCCEEHHHHHHHHHHCCCCHHHH
DAVLAALNEARIPSGRIYDVADIAADPHYRARDMLVDAALPDGTPVLVPGIVPKLGATPG
HHHHHHHHHHCCCCCCEEEHHHHCCCCCCHHHHHEEECCCCCCCEEEECCCCHHCCCCCC
RIEHAAPALGADTDAVLESLGIDAATRGDWRTRGVI
CCHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]