Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 78066284

GI number: 78066284

Start: 1828649

End: 1829839

Strand: Direct

Name: yfdE [H]

Synonym: Bcep18194_A4814

Alternate gene names: 78066284

Gene position: 1828649-1829839 (Clockwise)

Preceding gene: 78066281

Following gene: 78066285

Centisome position: 49.5

GC content: 70.86

Gene sequence:

>1191_bases
ATGGCGGAACACGAGCAGCAGGGCGCGCTGGAGGGATTGCGCATCATCGATCTGTCGCGGGTGCTGGGCGGCCCGTACGC
CACGCAGATCCTGGCCGACCACGGCGCCGAGGTGATCAAGGTCGAACCGCCATCCGGCGACGAAACGCGCACGTGGGGCC
CGCCGTTCGACGGCGATACCGCGTCGTACTTCCTCGGCGTGAACCGCAACAAGCTCGGCATCGCGCTCGACCTGACGCAA
CCGGCCGACCGCGAGCGGCTGCTCGGCCTGCTCGAACATGCGGACGCCATCGTCGAGAACTTCAAGATCGGCACGATGGA
GCGCTGGGGGCTCGGCTTCGACGCACTGCACGCGCGGTTTCCGCGCCTCGTCCATTGCCGCGTGTCGGGCTTTGGCTCGG
ACGGCCCGCTCGGCGGGCTGCCGGGCTACGACGCGGCCGTGCAGGCGCTCGCGGGGCTGATGAGCGTCAATGGCGAGGCG
GGTGGCGCGCCGCTGCGGGTCGGCGTGCCGATCGTCGATCTCGTGACCGGGCTGAACGCGGCGCTCGGCGTGCTGATGGC
GCTGCGCGAGCGCGACGCGAGCGGCCGTGGCCAGTTCGTCGAATCGACGCTGTTCGACTGCGCGCTGTCGATCCTGCATC
CGCATACGCCGAACTTCTTCCATTCGAGGAATGCGCCCGTGCGCACCGGCAACGCGCATCCGAACATCACGCCGTACGAC
AGCTTTCCGACGGCGAGCGTCGACATCTTTCTGGCGGTCGGCAACAACGGGCAGTTCGCGGGGCTGTGCGACGTGCTCGG
CACGCGCGACTGGCTCGACGATCCGCGTTTCGCGGACAACCGCGCGCGCAGCGCGAATCGCGCCGCACTACGCACGCTGC
TCGAAACGGCGCTGGCCGGACACGACGGCGCGGCGCTCGCCGAGCAGCTGATGCGCCGCGGCGTGCCGTGCGCGCCGGTG
CTCGGGCTCGATGCGGCGCTCGACCATCCGCATGTCGCGCATCGGCAGATGAAGGTCGAGCTGGGCCGGCATCGCGGCAT
CGCGTCGCCGATCAAGCTCGGCCGCACGCCGGCCACGTACCGGCGGCCGCCGCCCGCGCTGAACGAACACGCCGCCCGGG
TGTTCGCCGACGCGGACGCCAACGACCGCGACCACGACCACGACCACGACCACGACACGCGCCGGGACTGA

Upstream 100 bases:

>100_bases
TCACGCACAGGAATTATTCGTCGAATCCGGAAGGTCGCGCCGCAGGCGCCGGGCCTGCCGGAACCGGCAGTCCGATCAAC
CGGAACCAGGAGCGGGACGC

Downstream 100 bases:

>100_bases
CCGGCGTCGCAGCCGCCAGCCGTGCCGCGCGCCCGACGGCGCCGCACGGCCATGCACAACCATTCGAACACCACGCCGGG
CCCCACACGGGCGCACCGGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MAEHEQQGALEGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDTASYFLGVNRNKLGIALDLTQ
PADRERLLGLLEHADAIVENFKIGTMERWGLGFDALHARFPRLVHCRVSGFGSDGPLGGLPGYDAAVQALAGLMSVNGEA
GGAPLRVGVPIVDLVTGLNAALGVLMALRERDASGRGQFVESTLFDCALSILHPHTPNFFHSRNAPVRTGNAHPNITPYD
SFPTASVDIFLAVGNNGQFAGLCDVLGTRDWLDDPRFADNRARSANRAALRTLLETALAGHDGAALAEQLMRRGVPCAPV
LGLDAALDHPHVAHRQMKVELGRHRGIASPIKLGRTPATYRRPPPALNEHAARVFADADANDRDHDHDHDHDTRRD

Sequences:

>Translated_396_residues
MAEHEQQGALEGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDTASYFLGVNRNKLGIALDLTQ
PADRERLLGLLEHADAIVENFKIGTMERWGLGFDALHARFPRLVHCRVSGFGSDGPLGGLPGYDAAVQALAGLMSVNGEA
GGAPLRVGVPIVDLVTGLNAALGVLMALRERDASGRGQFVESTLFDCALSILHPHTPNFFHSRNAPVRTGNAHPNITPYD
SFPTASVDIFLAVGNNGQFAGLCDVLGTRDWLDDPRFADNRARSANRAALRTLLETALAGHDGAALAEQLMRRGVPCAPV
LGLDAALDHPHVAHRQMKVELGRHRGIASPIKLGRTPATYRRPPPALNEHAARVFADADANDRDHDHDHDHDTRRD
>Mature_395_residues
AEHEQQGALEGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDTASYFLGVNRNKLGIALDLTQP
ADRERLLGLLEHADAIVENFKIGTMERWGLGFDALHARFPRLVHCRVSGFGSDGPLGGLPGYDAAVQALAGLMSVNGEAG
GAPLRVGVPIVDLVTGLNAALGVLMALRERDASGRGQFVESTLFDCALSILHPHTPNFFHSRNAPVRTGNAHPNITPYDS
FPTASVDIFLAVGNNGQFAGLCDVLGTRDWLDDPRFADNRARSANRAALRTLLETALAGHDGAALAEQLMRRGVPCAPVL
GLDAALDHPHVAHRQMKVELGRHRGIASPIKLGRTPATYRRPPPALNEHAARVFADADANDRDHDHDHDHDTRRD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=375, Percent_Identity=33.8666666666667, Blast_Score=243, Evalue=2e-64,
Organism=Homo sapiens, GI300863124, Length=401, Percent_Identity=31.6708229426434, Blast_Score=229, Evalue=3e-60,
Organism=Homo sapiens, GI13376042, Length=401, Percent_Identity=29.1770573566085, Blast_Score=197, Evalue=1e-50,
Organism=Homo sapiens, GI300863126, Length=375, Percent_Identity=30.1333333333333, Blast_Score=192, Evalue=4e-49,
Organism=Homo sapiens, GI266456254, Length=199, Percent_Identity=33.6683417085427, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI42794625, Length=199, Percent_Identity=33.6683417085427, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI266458397, Length=199, Percent_Identity=33.6683417085427, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI266458393, Length=199, Percent_Identity=33.6683417085427, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=34.7222222222222, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI42822893, Length=144, Percent_Identity=34.7222222222222, Blast_Score=83, Evalue=4e-16,
Organism=Escherichia coli, GI87082093, Length=376, Percent_Identity=36.436170212766, Blast_Score=254, Evalue=9e-69,
Organism=Escherichia coli, GI1788717, Length=405, Percent_Identity=26.4197530864197, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1786222, Length=338, Percent_Identity=24.8520710059172, Blast_Score=79, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI32564160, Length=258, Percent_Identity=25.5813953488372, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115535051, Length=205, Percent_Identity=26.3414634146341, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24648431, Length=377, Percent_Identity=36.8700265251989, Blast_Score=233, Evalue=2e-61,
Organism=Drosophila melanogaster, GI24585488, Length=244, Percent_Identity=29.0983606557377, Blast_Score=97, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42614; Mature: 42483

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEHEQQGALEGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDT
CCCCCHHHHHCCCHHEEHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCC
ASYFLGVNRNKLGIALDLTQPADRERLLGLLEHADAIVENFKIGTMERWGLGFDALHARF
CEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHC
PRLVHCRVSGFGSDGPLGGLPGYDAAVQALAGLMSVNGEAGGAPLRVGVPIVDLVTGLNA
CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHH
ALGVLMALRERDASGRGQFVESTLFDCALSILHPHTPNFFHSRNAPVRTGNAHPNITPYD
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SFPTASVDIFLAVGNNGQFAGLCDVLGTRDWLDDPRFADNRARSANRAALRTLLETALAG
CCCCCCEEEEEEECCCCCEEHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
HDGAALAEQLMRRGVPCAPVLGLDAALDHPHVAHRQMKVELGRHRGIASPIKLGRTPATY
CCHHHHHHHHHHCCCCCCCHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC
RRPPPALNEHAARVFADADANDRDHDHDHDHDTRRD
CCCCCCHHHHHHHEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AEHEQQGALEGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDT
CCCCHHHHHCCCHHEEHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCC
ASYFLGVNRNKLGIALDLTQPADRERLLGLLEHADAIVENFKIGTMERWGLGFDALHARF
CEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHC
PRLVHCRVSGFGSDGPLGGLPGYDAAVQALAGLMSVNGEAGGAPLRVGVPIVDLVTGLNA
CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHH
ALGVLMALRERDASGRGQFVESTLFDCALSILHPHTPNFFHSRNAPVRTGNAHPNITPYD
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SFPTASVDIFLAVGNNGQFAGLCDVLGTRDWLDDPRFADNRARSANRAALRTLLETALAG
CCCCCCEEEEEEECCCCCEEHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
HDGAALAEQLMRRGVPCAPVLGLDAALDHPHVAHRQMKVELGRHRGIASPIKLGRTPATY
CCHHHHHHHHHHCCCCCCCHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC
RRPPPALNEHAARVFADADANDRDHDHDHDHDTRRD
CCCCCCHHHHHHHEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]