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The map label for this gene is fecI [C]

Identifier: 78066248

GI number: 78066248

Start: 1777811

End: 1778467

Strand: Direct

Name: fecI [C]

Synonym: Bcep18194_A4778

Alternate gene names: 78066248

Gene position: 1777811-1778467 (Clockwise)

Preceding gene: 78066245

Following gene: 78066249

Centisome position: 48.13

GC content: 70.32

Gene sequence:

>657_bases
ATGGCAATGGCGGAAGTGCTCGACCGACCGGCGGCGGCAGCGGCGAACCCGTTCCTCGGCAGTTTTTCCGACCGGCCGCC
GCGTGCGCGCCGGACCGCGGAACCTCGTGTGCAGGGCGCGTTGCTCGACGTGCTGATCTCGCACCGCGCGATGCTCGTCA
ATGTCGCGCGCGGCTTCGTCGGCTGCGCGAGCCGCGCCGAGGACGTCGTGCACGACGTATTCGTGAAGCTCGTCGAATTC
CCGAACCAGGACGCGGTGCGCCAGCCGGTCGCGTACGTGACGCGGATGGTGCGCAATGCGTCGATCGATGCATGCCGCCG
CCAAAGCCTCGAGAACGTCTATCACACGGAAGAGGACGACGGCTTCGACGTGCCGTCGCCCGAGCCGACGCCGGAAGCCG
CGCTGCTGACACGCGATACGCTGCGGCGCGTGTGGGCGGCGCTCGACGACCTGCCGGCGCGTAGCCGCGCGGCCTTCGAG
ATGGTGCGGCTGCGCGAGGAGACGCTGCAGACCGCGGCGCGCGCGCTGAACGTATCGCAGACGCTCGTGCATTTCATGGT
GCGCGACGCGGAGCGCCACTGCGCGGAATGCCTCGACGCATGCCATCGCGGTGTCGCGTGCCCGGTGTTCCTGGGCGGCC
GCGCACGGCGCCGGTAA

Upstream 100 bases:

>100_bases
GACAAATCCTGACAACTGAAAGGGATATCTCGTAATCGGATTGAGAATGATTTGCGTTTACGTTAAATTGCGCTATCTCG
GAATTTGACGGAGCAGATCG

Downstream 100 bases:

>100_bases
AAAACCGCGCCGGCCAATCGTCTATCAGACAGGAGCGGCCGAACCCGCCGCTTCGCCACCTTCAACCGCCTCAGCGATTT
CCGATCATGACGCAAGCCAC

Product: extracytoplasmic-function sigma-70 factor

Products: NA

Alternate protein names: Extracytoplasmic-Function Sigma-70 Factor; Extracytoplasmic-Function Sigma-70 Factor PvdS; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Subfamily RNA Polymerase Sigma-70 Factor; Sigma-; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; Sigma Factor; RNA Polymerase Sigma-70 Family Protein; RNA Polymerase Sigma Factor FECI Protein; Ferric Regulator Sigma-24 Subunit; ECF Family RNA Polymerase Sigma Factor; DNA-Directed RNA Polymerase Sigma-E/Sigma-24/FecI; FecI Like Protein; RNA Polymerase Sigma Factor Protein

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MAMAEVLDRPAAAAANPFLGSFSDRPPRARRTAEPRVQGALLDVLISHRAMLVNVARGFVGCASRAEDVVHDVFVKLVEF
PNQDAVRQPVAYVTRMVRNASIDACRRQSLENVYHTEEDDGFDVPSPEPTPEAALLTRDTLRRVWAALDDLPARSRAAFE
MVRLREETLQTAARALNVSQTLVHFMVRDAERHCAECLDACHRGVACPVFLGGRARRR

Sequences:

>Translated_218_residues
MAMAEVLDRPAAAAANPFLGSFSDRPPRARRTAEPRVQGALLDVLISHRAMLVNVARGFVGCASRAEDVVHDVFVKLVEF
PNQDAVRQPVAYVTRMVRNASIDACRRQSLENVYHTEEDDGFDVPSPEPTPEAALLTRDTLRRVWAALDDLPARSRAAFE
MVRLREETLQTAARALNVSQTLVHFMVRDAERHCAECLDACHRGVACPVFLGGRARRR
>Mature_217_residues
AMAEVLDRPAAAAANPFLGSFSDRPPRARRTAEPRVQGALLDVLISHRAMLVNVARGFVGCASRAEDVVHDVFVKLVEFP
NQDAVRQPVAYVTRMVRNASIDACRRQSLENVYHTEEDDGFDVPSPEPTPEAALLTRDTLRRVWAALDDLPARSRAAFEM
VRLREETLQTAARALNVSQTLVHFMVRDAERHCAECLDACHRGVACPVFLGGRARRR

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24243; Mature: 24112

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMAEVLDRPAAAAANPFLGSFSDRPPRARRTAEPRVQGALLDVLISHRAMLVNVARGFV
CCHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GCASRAEDVVHDVFVKLVEFPNQDAVRQPVAYVTRMVRNASIDACRRQSLENVYHTEEDD
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
GFDVPSPEPTPEAALLTRDTLRRVWAALDDLPARSRAAFEMVRLREETLQTAARALNVSQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLVHFMVRDAERHCAECLDACHRGVACPVFLGGRARRR
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHEECCCCCCC
>Mature Secondary Structure 
AMAEVLDRPAAAAANPFLGSFSDRPPRARRTAEPRVQGALLDVLISHRAMLVNVARGFV
CHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GCASRAEDVVHDVFVKLVEFPNQDAVRQPVAYVTRMVRNASIDACRRQSLENVYHTEEDD
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
GFDVPSPEPTPEAALLTRDTLRRVWAALDDLPARSRAAFEMVRLREETLQTAARALNVSQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLVHFMVRDAERHCAECLDACHRGVACPVFLGGRARRR
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA