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The map label for this gene is nodJ [H]

Identifier: 78066203

GI number: 78066203

Start: 1725000

End: 1725833

Strand: Reverse

Name: nodJ [H]

Synonym: Bcep18194_A4733

Alternate gene names: 78066203

Gene position: 1725833-1725000 (Counterclockwise)

Preceding gene: 78066204

Following gene: 78066198

Centisome position: 46.72

GC content: 66.55

Gene sequence:

>834_bases
ATGGACGTCCGCAACTATTCCGCCGCCGCACCGTCGGCAACACCGCGCGTGTCACGTTTCGCGATCGCCATGCCTGCGAA
CGCGACCAACTGGATCGCCGTCTGGCGGCGCAACTATCTCGTCTGGCGCAAGCTCGCGCTCGCGTCGATGTTCGGCAATC
TTGCCGATCCGATGATCTATCTGTTCGGGTTGGGGTTCGGGCTCGGGCTGATGCTCGGCCATGTCGACGGCGTGTCGTAT
ATCGCGTTCCTCGCGGCCGGCACGGTCGGGTCGAGCGTGATGATGTCCGCGAGCTTCGAGTCGATGTATTCGGGATTCTC
GCGGATGCACGTGCAGCGCACGTGGGAAGCGATCATGCATACGCCGCTCGCGCTCGGCGACATCGTGCTCGGCGAGATCA
TCTGGGGGGCCAGCAAGGCGATGCTGTCGGGGGCCGCGATCATGCTCGTCGCGGGGGCGCTCGGCTATGCGCAGTTTCCG
TCGATGCTCGTGGCGCTGCCCGTGATCGCGCTCGCGGGCCTCGCGTTTGCCAGCATCGCGATGATCGTCACGGCGCTCGC
GCCGTCCTACGATTTCTTCATGTTTTATCAGACGCTCGTGCTGACGCCGATGCTGCTGCTGTCGGGCGTGTTCTTCCCGA
TCACGCAGTTGCCGCCGATCGCGCAGCATGCGGCGCAGGCGCTGCCGCTCGCGAACGCTGTCGAGCTGATCCGGCCCGCG
ATGCTCGGCCGGCCGGCGACCGACGTCGCGCTGCATGTCGCGGTGCTCGCCGGCTACGCGGTCGGCGGCTTCCTGCTGTC
CGCATGGCTGTTCCGGCGGCGGATGATGCGCTGA

Upstream 100 bases:

>100_bases
ACTCAAGGGTCGCACGGGGTTGCGCTATCTGCATCGCCCGGCCAATCTTGAAGATGTGTTCCTGCGGCTCACGGGCCGCG
AAATGCAGGACTGATCGATC

Downstream 100 bases:

>100_bases
TGGCCGGCACACCGGGCGCCGGCTTCATGCGACGACGTTACTCGTCGTCGTCGCTCCACGGGATTTCGACGTCGGTCAGG
AACGCGACGGTCGCGAGCGG

Product: ABC efflux pump, inner membrane subunit, NodJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MDVRNYSAAAPSATPRVSRFAIAMPANATNWIAVWRRNYLVWRKLALASMFGNLADPMIYLFGLGFGLGLMLGHVDGVSY
IAFLAAGTVGSSVMMSASFESMYSGFSRMHVQRTWEAIMHTPLALGDIVLGEIIWGASKAMLSGAAIMLVAGALGYAQFP
SMLVALPVIALAGLAFASIAMIVTALAPSYDFFMFYQTLVLTPMLLLSGVFFPITQLPPIAQHAAQALPLANAVELIRPA
MLGRPATDVALHVAVLAGYAVGGFLLSAWLFRRRMMR

Sequences:

>Translated_277_residues
MDVRNYSAAAPSATPRVSRFAIAMPANATNWIAVWRRNYLVWRKLALASMFGNLADPMIYLFGLGFGLGLMLGHVDGVSY
IAFLAAGTVGSSVMMSASFESMYSGFSRMHVQRTWEAIMHTPLALGDIVLGEIIWGASKAMLSGAAIMLVAGALGYAQFP
SMLVALPVIALAGLAFASIAMIVTALAPSYDFFMFYQTLVLTPMLLLSGVFFPITQLPPIAQHAAQALPLANAVELIRPA
MLGRPATDVALHVAVLAGYAVGGFLLSAWLFRRRMMR
>Mature_277_residues
MDVRNYSAAAPSATPRVSRFAIAMPANATNWIAVWRRNYLVWRKLALASMFGNLADPMIYLFGLGFGLGLMLGHVDGVSY
IAFLAAGTVGSSVMMSASFESMYSGFSRMHVQRTWEAIMHTPLALGDIVLGEIIWGASKAMLSGAAIMLVAGALGYAQFP
SMLVALPVIALAGLAFASIAMIVTALAPSYDFFMFYQTLVLTPMLLLSGVFFPITQLPPIAQHAAQALPLANAVELIRPA
MLGRPATDVALHVAVLAGYAVGGFLLSAWLFRRRMMR

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=249, Percent_Identity=24.0963855421687, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29741; Mature: 29741

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.9 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.9 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]