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The map label for this gene is rbsC [H]

Identifier: 78066152

GI number: 78066152

Start: 1674605

End: 1675642

Strand: Reverse

Name: rbsC [H]

Synonym: Bcep18194_A4682

Alternate gene names: 78066152

Gene position: 1675642-1674605 (Counterclockwise)

Preceding gene: 78066153

Following gene: 78066151

Centisome position: 45.36

GC content: 67.73

Gene sequence:

>1038_bases
ATGATCAACCCGACCAAGCAGCGGAACCTCGCTTCCGCGACGGCCCAGCCGGTGGCCACCCGTACGCCGCTATTGCGCGG
CGCCGATCACCGCGCCCGCATGCAATCGCTGATCCGCACCGCCGGCATGCTGCCGGTGCTGCTGGTTCTGTGCATCGGCT
TCGGTTTCCTGACCGACGGTTTCTTCACGCTGCAGAACCTGTCGATCGTCACGCAGCAGGCGTCGATCAACATCGTGCTC
GCCGCCGGCATGACCTTCGTGATCCTGACGGGCGGCATCGACCTGTCGGTCGGCTCGGTGCTCGCCGCCGCCGCCGTCGC
GGCGCTGCTCGCGTCGACCATCCCGGGCTGGGGCTGGCTCGGCGTGCCGTTCGCGCTCATCGTCGGCCTCGTGTTCGGCG
CGATCAACGGCGGCCTGATCTCGTTCCTGCGCCTGCCGCCGTTCATCGTCACGCTCGGCGCGATGACGGCCGTACGCGGC
GTCGCGCGCCTGATCGGCAACGACACGACCGTGTTCAATCCGCAATTGCCGTTCGCGTTCATCGGCAACGGCACGATCCT
CGGCGTGCCTTGGCTCGTCGTGATCGCGTGCGCGGTGATCGCGATTTCGTGGTTCATCCTGCGCCGCACGGTGCTCGGGA
TGCGCATCTATTCGGTTGGCGGCAATCCGGAAGCCGCCCGCCTGTCGGGCATCAACGTGCGGGCGATCCAGATGTTCGTG
TACGCGGCGTCGGGGCTGCTCGCCGGCCTCGGCGCGGTGATGTCGGCCGCGCGGCTCTATGCGGCCAACGGCCTGCAGCT
CGGCCAGTCGTACGAACTCGACGCGATCGCCGCGGTGATCCTCGGCGGCACGAGCTTCGTCGGCGGCGTCGGTTCGATCG
TCGGCACGCTGATCGGTGCGCTGATCATCGCGGTGCTGACGAACGGCCTCGTACTGCTCGGCGTATCCGACATCTGGCAA
TACATCATCAAGGGGCTCGTGATCATCGGCGCGGTCGCGCTCGACCGCTACCGCCAGCGCGATTCGGCACGTACCTGA

Upstream 100 bases:

>100_bases
GGAAGCCATCATCGCGCTCGCCACCGGCTCGCAAGCCGAGCTCGCCGACGCGCACTGAGCCTCGCCCTTTTCATTTCCTT
CTTACATTCAGGTTAACGAA

Downstream 100 bases:

>100_bases
GCGCCTGCCCGTCCATCCAACCTTGCGGCGCGGGCCGATCCCCGCGCCAGCTCGCCAAGCAACTTCACGGAGACACAACG
ACATGTTCAAGCACAAAGCC

Product: ABC sugar transporter, inner membrane subunit

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MINPTKQRNLASATAQPVATRTPLLRGADHRARMQSLIRTAGMLPVLLVLCIGFGFLTDGFFTLQNLSIVTQQASINIVL
AAGMTFVILTGGIDLSVGSVLAAAAVAALLASTIPGWGWLGVPFALIVGLVFGAINGGLISFLRLPPFIVTLGAMTAVRG
VARLIGNDTTVFNPQLPFAFIGNGTILGVPWLVVIACAVIAISWFILRRTVLGMRIYSVGGNPEAARLSGINVRAIQMFV
YAASGLLAGLGAVMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGALIIAVLTNGLVLLGVSDIWQ
YIIKGLVIIGAVALDRYRQRDSART

Sequences:

>Translated_345_residues
MINPTKQRNLASATAQPVATRTPLLRGADHRARMQSLIRTAGMLPVLLVLCIGFGFLTDGFFTLQNLSIVTQQASINIVL
AAGMTFVILTGGIDLSVGSVLAAAAVAALLASTIPGWGWLGVPFALIVGLVFGAINGGLISFLRLPPFIVTLGAMTAVRG
VARLIGNDTTVFNPQLPFAFIGNGTILGVPWLVVIACAVIAISWFILRRTVLGMRIYSVGGNPEAARLSGINVRAIQMFV
YAASGLLAGLGAVMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGALIIAVLTNGLVLLGVSDIWQ
YIIKGLVIIGAVALDRYRQRDSART
>Mature_345_residues
MINPTKQRNLASATAQPVATRTPLLRGADHRARMQSLIRTAGMLPVLLVLCIGFGFLTDGFFTLQNLSIVTQQASINIVL
AAGMTFVILTGGIDLSVGSVLAAAAVAALLASTIPGWGWLGVPFALIVGLVFGAINGGLISFLRLPPFIVTLGAMTAVRG
VARLIGNDTTVFNPQLPFAFIGNGTILGVPWLVVIACAVIAISWFILRRTVLGMRIYSVGGNPEAARLSGINVRAIQMFV
YAASGLLAGLGAVMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGALIIAVLTNGLVLLGVSDIWQ
YIIKGLVIIGAVALDRYRQRDSART

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4158

COG function: function code R; Predicted ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=298, Percent_Identity=46.9798657718121, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1790524, Length=304, Percent_Identity=38.1578947368421, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI1788896, Length=336, Percent_Identity=34.8214285714286, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI145693152, Length=299, Percent_Identity=33.1103678929766, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI87082395, Length=293, Percent_Identity=36.8600682593857, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1788471, Length=338, Percent_Identity=36.6863905325444, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI145693214, Length=264, Percent_Identity=39.7727272727273, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1789992, Length=138, Percent_Identity=46.3768115942029, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787793, Length=289, Percent_Identity=32.1799307958478, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787794, Length=313, Percent_Identity=30.0319488817891, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35826; Mature: 35826

Theoretical pI: Translated: 11.23; Mature: 11.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINPTKQRNLASATAQPVATRTPLLRGADHRARMQSLIRTAGMLPVLLVLCIGFGFLTDG
CCCCCCHHHHHHHHCCCCHHCCCHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
FFTLQNLSIVTQQASINIVLAAGMTFVILTGGIDLSVGSVLAAAAVAALLASTIPGWGWL
HHHHHHHHHEEECCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
GVPFALIVGLVFGAINGGLISFLRLPPFIVTLGAMTAVRGVARLIGNDTTVFNPQLPFAF
HHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEE
IGNGTILGVPWLVVIACAVIAISWFILRRTVLGMRIYSVGGNPEAARLSGINVRAIQMFV
ECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHCCCCCHHHHHHHH
YAASGLLAGLGAVMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LIIAVLTNGLVLLGVSDIWQYIIKGLVIIGAVALDRYRQRDSART
HHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MINPTKQRNLASATAQPVATRTPLLRGADHRARMQSLIRTAGMLPVLLVLCIGFGFLTDG
CCCCCCHHHHHHHHCCCCHHCCCHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
FFTLQNLSIVTQQASINIVLAAGMTFVILTGGIDLSVGSVLAAAAVAALLASTIPGWGWL
HHHHHHHHHEEECCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
GVPFALIVGLVFGAINGGLISFLRLPPFIVTLGAMTAVRGVARLIGNDTTVFNPQLPFAF
HHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEE
IGNGTILGVPWLVVIACAVIAISWFILRRTVLGMRIYSVGGNPEAARLSGINVRAIQMFV
ECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHCCCCCHHHHHHHH
YAASGLLAGLGAVMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LIIAVLTNGLVLLGVSDIWQYIIKGLVIIGAVALDRYRQRDSART
HHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]