Click here to switch to the map view.

The map label for this gene is yoaB [C]

Identifier: 78066084

GI number: 78066084

Start: 1594331

End: 1594684

Strand: Direct

Name: yoaB [C]

Synonym: Bcep18194_A4613

Alternate gene names: 78066084

Gene position: 1594331-1594684 (Clockwise)

Preceding gene: 78066083

Following gene: 78066085

Centisome position: 43.16

GC content: 63.56

Gene sequence:

>354_bases
ATGGCAGTCATTCGTCACCACGTCGGGGCCCGTCTCTCCGAAACCGCGATCCACAACGGTACCGTGTATCTGGCCGGCCA
GATCGCCGAAGACACCACGCAGGACATCAAGGGCCAGACGCGCGAAGTGCTCGGCCACATCGATCGCCTGCTCGCCGAAG
CGAACAGCGACAAGGCGCATCTGCTGTCGGTGCAGATCTACATCTCGGATCTGGCAAACTTCGAAGGCATGAATGCGGAG
TGGGATGCATGGGTCGCGCACGGCAACACGCCGCCGCGTGCCACCGTCGAGGCGAAGCTTGCGGATCCGGCGCTGCTCGT
CGAGATCGTGGTCGTTGCTGCCCAGCGGAGCTGA

Upstream 100 bases:

>100_bases
TCGTCGAAGGCGGCGCATAAACGCGTCATAATATGCGGTTCGGCGGCACGCGGGCCGTGCCGCCGCCCGATTTCTCACCC
ATTCACGACCGGAACATTCC

Downstream 100 bases:

>100_bases
ACGTAACCCGACGATGATCGCATTCCGCCAGGCCGAGCAATGACCGAGTCCGTTTCCGCCTCCCCCGTCGCGGCACCGTC
GTTCGACGACGTGCTCGCGT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MAVIRHHVGARLSETAIHNGTVYLAGQIAEDTTQDIKGQTREVLGHIDRLLAEANSDKAHLLSVQIYISDLANFEGMNAE
WDAWVAHGNTPPRATVEAKLADPALLVEIVVVAAQRS

Sequences:

>Translated_117_residues
MAVIRHHVGARLSETAIHNGTVYLAGQIAEDTTQDIKGQTREVLGHIDRLLAEANSDKAHLLSVQIYISDLANFEGMNAE
WDAWVAHGNTPPRATVEAKLADPALLVEIVVVAAQRS
>Mature_116_residues
AVIRHHVGARLSETAIHNGTVYLAGQIAEDTTQDIKGQTREVLGHIDRLLAEANSDKAHLLSVQIYISDLANFEGMNAEW
DAWVAHGNTPPRATVEAKLADPALLVEIVVVAAQRS

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=114, Percent_Identity=40.3508771929825, Blast_Score=89, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12674; Mature: 12543

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVIRHHVGARLSETAIHNGTVYLAGQIAEDTTQDIKGQTREVLGHIDRLLAEANSDKAH
CCEEHHHHCCCHHHHEECCCEEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCEE
LLSVQIYISDLANFEGMNAEWDAWVAHGNTPPRATVEAKLADPALLVEIVVVAAQRS
EEEEEEEEEHHCCCCCCCCCCCEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AVIRHHVGARLSETAIHNGTVYLAGQIAEDTTQDIKGQTREVLGHIDRLLAEANSDKAH
CEEHHHHCCCHHHHEECCCEEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCEE
LLSVQIYISDLANFEGMNAEWDAWVAHGNTPPRATVEAKLADPALLVEIVVVAAQRS
EEEEEEEEEHHCCCCCCCCCCCEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA