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The map label for this gene is rbn [C]

Identifier: 78066072

GI number: 78066072

Start: 1581977

End: 1583308

Strand: Direct

Name: rbn [C]

Synonym: Bcep18194_A4601

Alternate gene names: 78066072

Gene position: 1581977-1583308 (Clockwise)

Preceding gene: 78066066

Following gene: 78066074

Centisome position: 42.82

GC content: 67.49

Gene sequence:

>1332_bases
TTGCCGAAGTTGAGCGTCGATCTCGACACCATCAAGCGCCTCGCGCAGTTCGCGGCCCGGCGCAGCGCCGAGGATCGCAT
CCCGCAAGTGGCGGGCAGTCTGACGTTCACGACGATGCTGGCGCTCGTGCCGCTCGTGACGGTCGCGTTCGCGCTGTTCA
CCGCGTTCCCGATGTTCGCGTCGTTCCAGATCTCGCTGCAGGGGTTCCTCGCGGATCACCTGATGCCTGCGCAGTTCAAC
ATCCAGATCTTCAAGTACCTGAACCAGTTCGCGTCGAAGGCGAAGGGGCTGACGACCGCCGGCCTGATCGTGCTCGTCGT
CACGTCGGTGATGACGATGATGACGATCGAGTCGGCGTTCAACCTGATCTGGCGCGTGCGCAAGCCGCGGCCATTCGCGC
AGCGCGTGCTCGCGTACTGGGCGCTGATCACGCTCGGCCCGCTGCTGTTCGGCGTGAGCCTGTCGATCTCGTCGTACCTG
TTCACGCAGTCGCTGGCGTTTACGGGCGCCGCGCCGTCGACATCGATCGTCGAGTGGCTGCTCGCGCTCGTATCGTTGCC
GCTGACGGTGCTCGCGTTCACGCTGCTGTACGTGTACCTGCCGAACTGCACGGTCGCATGGCGCGACGCCGTGATCGGCG
GGCTGTTCGCGGCTGTGGCATTCGAGCTCGCGAAGCGTGGCTTCGGCTACTACGTGCGGCGCATTCCGACCTATACGGCC
GTCTATGGCGCGTTCGCGGCGCTGCCCGTGTTCCTGTTATGGGTGTACCTGAGCTGGTTCATCGCGCTGCTCGGCGCGAT
GGTGGCCTCCGCGCTGCCGGCGATCCGCGTCGGCCAGTTCCACCGTATCCACTATCCGGGCAGCGACCTGCTCGACGCGC
TGGAAATGCTCGCGCGGCTGGCCGAAGCGCGCACGGTCGGCAAGCGCGGCTACACGGCGATGCGGCTCGCGACCATGCTG
CGCTGCGACATGGAAACCGCCCAGCGCTTGCTGACGACGATGGAGGAGCGGGAATGGATTGCGCGGCTTGACGGCGGCGG
CGAGACCACGCCGCGCTACATCCTGCTCGCGAACCCGGAGCAGCTGACGCTCGCGCAGCTGTTCGACGTGCTGGTGATCG
ACCGCACGGAGCTGACCTACCAGTTGCAGAGGCGCCGCAGCCACGTCGATGGCGCTGCGCTGCTTGCGGTGCTGTCGAGT
GACCGCTTTGACGTGTCGCTCGCGTCGCTGATCGCCGCGCACCGGCTTGCGGGTGCGCAGCCGGCGGCGATCCCGGGGCA
GGCGCCGGGTACCGTGTCCGACCCGCATGCACGCCCGCCGCGGCCCGCGTGA

Upstream 100 bases:

>100_bases
GCCCCTGCTGGAATCGAGCGGCTATTATAGGGGCTGAAGCCGTCGCGCAGCGCGACGGCGGCGCGCCGTCGGGCGCGCGG
CATCAAGAAGGAGAAGCCGT

Downstream 100 bases:

>100_bases
GCAGGGCGCCCGGCCGCTACAACGGGATCTTGCCCGTGCAGATGTCCTTGAACATCACCCAGTCGCCCATCAGGCTGTAG
ATCGGGTGCCGGAACGTGGC

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MPKLSVDLDTIKRLAQFAARRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFASFQISLQGFLADHLMPAQFN
IQIFKYLNQFASKAKGLTTAGLIVLVVTSVMTMMTIESAFNLIWRVRKPRPFAQRVLAYWALITLGPLLFGVSLSISSYL
FTQSLAFTGAAPSTSIVEWLLALVSLPLTVLAFTLLYVYLPNCTVAWRDAVIGGLFAAVAFELAKRGFGYYVRRIPTYTA
VYGAFAALPVFLLWVYLSWFIALLGAMVASALPAIRVGQFHRIHYPGSDLLDALEMLARLAEARTVGKRGYTAMRLATML
RCDMETAQRLLTTMEEREWIARLDGGGETTPRYILLANPEQLTLAQLFDVLVIDRTELTYQLQRRRSHVDGAALLAVLSS
DRFDVSLASLIAAHRLAGAQPAAIPGQAPGTVSDPHARPPRPA

Sequences:

>Translated_443_residues
MPKLSVDLDTIKRLAQFAARRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFASFQISLQGFLADHLMPAQFN
IQIFKYLNQFASKAKGLTTAGLIVLVVTSVMTMMTIESAFNLIWRVRKPRPFAQRVLAYWALITLGPLLFGVSLSISSYL
FTQSLAFTGAAPSTSIVEWLLALVSLPLTVLAFTLLYVYLPNCTVAWRDAVIGGLFAAVAFELAKRGFGYYVRRIPTYTA
VYGAFAALPVFLLWVYLSWFIALLGAMVASALPAIRVGQFHRIHYPGSDLLDALEMLARLAEARTVGKRGYTAMRLATML
RCDMETAQRLLTTMEEREWIARLDGGGETTPRYILLANPEQLTLAQLFDVLVIDRTELTYQLQRRRSHVDGAALLAVLSS
DRFDVSLASLIAAHRLAGAQPAAIPGQAPGTVSDPHARPPRPA
>Mature_442_residues
PKLSVDLDTIKRLAQFAARRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFASFQISLQGFLADHLMPAQFNI
QIFKYLNQFASKAKGLTTAGLIVLVVTSVMTMMTIESAFNLIWRVRKPRPFAQRVLAYWALITLGPLLFGVSLSISSYLF
TQSLAFTGAAPSTSIVEWLLALVSLPLTVLAFTLLYVYLPNCTVAWRDAVIGGLFAAVAFELAKRGFGYYVRRIPTYTAV
YGAFAALPVFLLWVYLSWFIALLGAMVASALPAIRVGQFHRIHYPGSDLLDALEMLARLAEARTVGKRGYTAMRLATMLR
CDMETAQRLLTTMEEREWIARLDGGGETTPRYILLANPEQLTLAQLFDVLVIDRTELTYQLQRRRSHVDGAALLAVLSSD
RFDVSLASLIAAHRLAGAQPAAIPGQAPGTVSDPHARPPRPA

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=257, Percent_Identity=39.6887159533074, Blast_Score=193, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 48725; Mature: 48594

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PKLSVDLDTIKRLAQFAARRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFA
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA