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The map label for this gene is yfdE [H]

Identifier: 78066023

GI number: 78066023

Start: 1523270

End: 1524490

Strand: Reverse

Name: yfdE [H]

Synonym: Bcep18194_A4552

Alternate gene names: 78066023

Gene position: 1524490-1523270 (Counterclockwise)

Preceding gene: 78066025

Following gene: 78066020

Centisome position: 41.27

GC content: 69.62

Gene sequence:

>1221_bases
ATGGGTGCCCTGAGCCATATCCGCGTGCTGGACCTCACCCGCGTGCTCGCGGGCCCGTGGTGCGCGCAGACGCTTGCCGA
TTTCGGCGCGGACGTGATCAAGGTCGAGCGCCCGGGCGCCGGCGACGACACGCGCCACTGGGGGCCGCCGTACCTGAAGG
ATGCGGACGGCGCGGATACCGCCGAGGCTGCGTACTACCTCGCGGCGAACCGCAACAAGCGCTCGGTGACGGTCGACATC
GCGACGCCCGAAGGCCAGCAGATTGTGCGCGAGCTTGCCGCGCAGAGCGACGTCGTGCTCGAGAACTACAAGGTCGGCCA
GTTGAAGAAATACGGGCTCGATTACGACTCGCTGCGCGCGGTGAAGCCCGATCTCGTCTACTGCTCGGTCACCGGCTTCG
GCCAGACGGGCCCGTATGCGCACCGCGCGGGCTACGACTTCATCATCCAGGGGATCGGCGGCTTCATGAGCATCACCGGC
GAGCGCGACGGCGAGCCGGGCGGCGGCCCGCAGAAGGCCGGTGTCGCGATCGCCGACCTCGCGACCGGCCTCTACTCGAC
GATCGCGGTACTCGCCGCGCTCGCGCACCGCGACCGGACCGGCGAAGGCCAGTACATCGACATGGCGCTGCTCGACGTGC
AGGTCGCGCTGCTCGCGAACATGAACACCAACTTCCTCGCGAGCGGCAAGCCGCCGGTGCGCTGGGGCAATGCGCATCCG
AACATCGTGCCGTACCAGACGTTCCAGACGCGCGACGGCTGGATCATCGTCGCGGTCGGCAACGACGGCCAGTTCCGCAA
CTTCGTCGAGGCCGGCGGCCAGCCCGGGCTGGCGGACGACGAGCGTTTCGCGACGAATCCGTCGCGCGTGCGCCACCGCG
ACACGCTGGTGCCGATCCTCGCGGAAATGGTGAAGGCGCGCGACAAGGCCGACTGGATCGGTGCGCTCGAAGCGGCCGGC
GTGCCGTGCGGGCCGATCAACGATCTCGACGAGGTGTTCGACAACGAGCAGGTGGTCGCGCGCGGGATGCAGGTATCGCT
GCCGCACCCGTGCGGCGCGGACGCGAAACTCGTGCGCAACCCGATCCGGATGAGCGCGACGCCGCCGGACGCACGCACGG
CCCCGCCGCTGCTCGGCGCGCAGACCGACGACGTGCTGCGCGACATGCTCGGCTACGACGACGCGAAGATCGCCGCGCTG
CGGGCGAAACAGGCGATCTGA

Upstream 100 bases:

>100_bases
GCCCGGGTGGGCCACCCGCGGGGCCGATTCGCCTTAAGATGCTCGGCATGCCAACCGGCCTTGCCCGACAAGGCCAGCCA
TGAAAGGAGACGATTCGACG

Downstream 100 bases:

>100_bases
ACGCGGGAGTTGGCGCGGGTGCGGGCGGGCTGGCCGTGGCAGCGGCCGCAACCACCGCCCCGCCCTGCGCTGTCAATCGC
CACGAGCGAGCGCGTCGAGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MGALSHIRVLDLTRVLAGPWCAQTLADFGADVIKVERPGAGDDTRHWGPPYLKDADGADTAEAAYYLAANRNKRSVTVDI
ATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYDSLRAVKPDLVYCSVTGFGQTGPYAHRAGYDFIIQGIGGFMSITG
ERDGEPGGGPQKAGVAIADLATGLYSTIAVLAALAHRDRTGEGQYIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHP
NIVPYQTFQTRDGWIIVAVGNDGQFRNFVEAGGQPGLADDERFATNPSRVRHRDTLVPILAEMVKARDKADWIGALEAAG
VPCGPINDLDEVFDNEQVVARGMQVSLPHPCGADAKLVRNPIRMSATPPDARTAPPLLGAQTDDVLRDMLGYDDAKIAAL
RAKQAI

Sequences:

>Translated_406_residues
MGALSHIRVLDLTRVLAGPWCAQTLADFGADVIKVERPGAGDDTRHWGPPYLKDADGADTAEAAYYLAANRNKRSVTVDI
ATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYDSLRAVKPDLVYCSVTGFGQTGPYAHRAGYDFIIQGIGGFMSITG
ERDGEPGGGPQKAGVAIADLATGLYSTIAVLAALAHRDRTGEGQYIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHP
NIVPYQTFQTRDGWIIVAVGNDGQFRNFVEAGGQPGLADDERFATNPSRVRHRDTLVPILAEMVKARDKADWIGALEAAG
VPCGPINDLDEVFDNEQVVARGMQVSLPHPCGADAKLVRNPIRMSATPPDARTAPPLLGAQTDDVLRDMLGYDDAKIAAL
RAKQAI
>Mature_405_residues
GALSHIRVLDLTRVLAGPWCAQTLADFGADVIKVERPGAGDDTRHWGPPYLKDADGADTAEAAYYLAANRNKRSVTVDIA
TPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYDSLRAVKPDLVYCSVTGFGQTGPYAHRAGYDFIIQGIGGFMSITGE
RDGEPGGGPQKAGVAIADLATGLYSTIAVLAALAHRDRTGEGQYIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHPN
IVPYQTFQTRDGWIIVAVGNDGQFRNFVEAGGQPGLADDERFATNPSRVRHRDTLVPILAEMVKARDKADWIGALEAAGV
PCGPINDLDEVFDNEQVVARGMQVSLPHPCGADAKLVRNPIRMSATPPDARTAPPLLGAQTDDVLRDMLGYDDAKIAALR
AKQAI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=397, Percent_Identity=43.8287153652393, Blast_Score=355, Evalue=4e-98,
Organism=Homo sapiens, GI300863124, Length=423, Percent_Identity=41.1347517730496, Blast_Score=341, Evalue=8e-94,
Organism=Homo sapiens, GI300863126, Length=397, Percent_Identity=38.0352644836272, Blast_Score=293, Evalue=3e-79,
Organism=Homo sapiens, GI13376042, Length=423, Percent_Identity=37.5886524822695, Blast_Score=292, Evalue=5e-79,
Organism=Homo sapiens, GI42794625, Length=409, Percent_Identity=27.6283618581907, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI266456254, Length=409, Percent_Identity=27.6283618581907, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI266458397, Length=273, Percent_Identity=32.2344322344322, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI266458393, Length=301, Percent_Identity=31.5614617940199, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI266458395, Length=161, Percent_Identity=32.9192546583851, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI42822893, Length=161, Percent_Identity=32.9192546583851, Blast_Score=95, Evalue=1e-19,
Organism=Escherichia coli, GI87082093, Length=364, Percent_Identity=33.5164835164835, Blast_Score=221, Evalue=8e-59,
Organism=Escherichia coli, GI1788717, Length=428, Percent_Identity=32.0093457943925, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1786222, Length=415, Percent_Identity=23.3734939759036, Blast_Score=77, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=341, Percent_Identity=25.8064516129032, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=353, Percent_Identity=25.2124645892351, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=47.1464019851117, Blast_Score=368, Evalue=1e-102,
Organism=Drosophila melanogaster, GI24585488, Length=347, Percent_Identity=27.3775216138329, Blast_Score=115, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43543; Mature: 43411

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGALSHIRVLDLTRVLAGPWCAQTLADFGADVIKVERPGAGDDTRHWGPPYLKDADGADT
CCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCH
AEAAYYLAANRNKRSVTVDIATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYDSLRA
HHHEEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHC
VKPDLVYCSVTGFGQTGPYAHRAGYDFIIQGIGGFMSITGERDGEPGGGPQKAGVAIADL
CCCCEEEEEEECCCCCCCCHHHCCHHHHHHHCCCEEEECCCCCCCCCCCCHHHCCHHHHH
ATGLYSTIAVLAALAHRDRTGEGQYIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHP
HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCC
NIVPYQTFQTRDGWIIVAVGNDGQFRNFVEAGGQPGLADDERFATNPSRVRHRDTLVPIL
CEECCCEEECCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHHH
AEMVKARDKADWIGALEAAGVPCGPINDLDEVFDNEQVVARGMQVSLPHPCGADAKLVRN
HHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHCCCEEECCCCCCCCHHHHHC
PIRMSATPPDARTAPPLLGAQTDDVLRDMLGYDDAKIAALRAKQAI
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
GALSHIRVLDLTRVLAGPWCAQTLADFGADVIKVERPGAGDDTRHWGPPYLKDADGADT
CCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCH
AEAAYYLAANRNKRSVTVDIATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYDSLRA
HHHEEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHC
VKPDLVYCSVTGFGQTGPYAHRAGYDFIIQGIGGFMSITGERDGEPGGGPQKAGVAIADL
CCCCEEEEEEECCCCCCCCHHHCCHHHHHHHCCCEEEECCCCCCCCCCCCHHHCCHHHHH
ATGLYSTIAVLAALAHRDRTGEGQYIDMALLDVQVALLANMNTNFLASGKPPVRWGNAHP
HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCC
NIVPYQTFQTRDGWIIVAVGNDGQFRNFVEAGGQPGLADDERFATNPSRVRHRDTLVPIL
CEECCCEEECCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHHH
AEMVKARDKADWIGALEAAGVPCGPINDLDEVFDNEQVVARGMQVSLPHPCGADAKLVRN
HHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHCCCEEECCCCCCCCHHHHHC
PIRMSATPPDARTAPPLLGAQTDDVLRDMLGYDDAKIAALRAKQAI
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]