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The map label for this gene is pupB [H]

Identifier: 78065975

GI number: 78065975

Start: 1468435

End: 1471011

Strand: Direct

Name: pupB [H]

Synonym: Bcep18194_A4504

Alternate gene names: 78065975

Gene position: 1468435-1471011 (Clockwise)

Preceding gene: 78065974

Following gene: 78065976

Centisome position: 39.75

GC content: 68.06

Gene sequence:

>2577_bases
ATGGGTAGTGAAAGCAGCACTGGCCCATCGTCCACCGACCTCCCGATCATGGTTTCCATCCGTCTCACGTATCGGCGCCG
TCCGGCGCCCGCCCGACATCTGCCGCGCGCGTCGCGCCCGGCCGCACCTGCCGCGCCGGGTCGCCTCGCGCGCCGGCTGG
CCGGCGCCGTCCTGGTGTCGGCGCTGCTGCCGCTACCCGCGCTGGCCGACACCGACACCGATGCGGCGCCGGCCGCGCAG
CGCGCGCCGCGCCGTGCGTTCGACATTCCGGCCGGGCCGCTCGAAGCGGCGCTGAACCGGTTCGGCCGCGATGCGGGCAT
CCTGCTCGCGTTTCCTGCCGAACTGACGGCCGGCCTGACGAGCGGCGGCGTGCAGGGCCGCTTCGACATCGACGGCGCGT
TCGACCGCCTGCTCGCGGGCACGGGGCTCGTCGCGTTGCGCCAGCCGGCTGGCGGTTACACGCTGAAGCGCGCGGACGGT
TCGCTTGCACGGCCCGCAGCGGCCGGCGTGGCCGCGGGCGCCGAGTTGCCCGCGATCAATGTGCGCACCAGCGCGCTGCG
CGCCGAAAGCTATCGCGCGCCGAAGGAAGCGGGCGTGCTGCGTTCCGATATCCCGCTGCTCGACACCGCGCAGGCCGTCA
ACATCGTGCCGGCGCAGGTGCTGCGCGACCAGCGTCCGCGCAATCTGGACGACGCGCTCGGCAACGTCAGCGGCATCACG
CAGGGCAACACGCTCGCGGGCACGCAGGACACGATCATGAAGCGCGGCTTCGGCGGCAACCGCGACGGCTCGATCATGCA
GAACGGGATGCCGCTCGTGCAGGGGCGCGCGTTCAACGCGGCGGTCGACAGCGTCGAGGTGCTGAAGGGGCCGACGTCGC
TGCTGTACGGGCTGATGGACCCGGGCGGCGTGGTCAACGTCGTCACCAAGCAGCCGCAGCTCAAGCGCTACAACGCGATC
TCGCTCGGCGCGTCGACGTTCGGGCACGGCAAGAACGGCGGCAGCGCGACCTTCGATTCGACCGGGCCGGTCGGCGATTC
GCGGCTCGCGTACCGGCTGATCGTCGACCAGTCGAACGAGCAGTACTGGCGCAATTTCGGCGAATACCGGCAGACCTTCG
TCGCGCCGTCGCTCGCATGGTATGGCCGCGATACGCAGGTCGCGGTGTCCTACCAGTATCGTAAATTCCATTCGCCGTTC
GATCGCGGCACCGCGCTCGACCCGCGCACCAACGCGCCGCTCGACATTCCCGCGCGGCGGCGCATCGACGAGCCGTTCAA
CAACATGGACGGCGAATCGCATCTCGCGCAGGTGAGCGTCGATCACCAGTTCAACGCGGACTGGAGCGCGCATTTCGGCT
ACAGCTACAACCGCGAGACCTACGACGCGAACCAGTTGCGCACGACCGGCGTCGATCCGGTGAAGGGCACGATGACGCGC
AGCAACGACGCGACGCACGGCTCGCTCAGCACCGACAGCTACGGGATCGGCTACGTGAACGGCAAGCTGATGCTGGGCGG
GATGCAGCACGACGTGCAGGTCGGCTTCGACACCGAATACCGCCGCATCTACCGCAAGGACATGCTGCGGCAGGCCGTGA
AGACGCCGTTCAACTATCTCAATCCTGTCTACGGGCTGCTGCCGCCGTCGAGCACGGTGTCGGCGAGCGACAGCGACCAG
ACCGACACGCTGCACGATGCGTCGGCGTTCGTGCAGGACACGATCCACCTGACCGACAAGTGGATCGTGTCGGGCGGGTT
GCGCTACATCACGTACAACCAGGTCGCGGGGCGCGGCCGGCCGTTCGTCGCGAACACCGATCTCAGCGGCTCGAAGTGGT
TGCCGCGCGCGGGCGTCGTCTACAAGTGGACCGACACGTTCTCGCTGTACGGCAGCTATTCGCAATCGCTGAAGCCGTCG
TCGTCGATCGCGCCGATGACGGGCTACATCATCGACGGCGCGACGCCGCCCGAGGAAGCGACTGCGTGGGAAGTGGGCGG
CAAGCTCGACCTGCCGGGCGGGGTGACGGGCACGCTCGCGCTTTTCAACATCGACAAGAAGAACGTGCTCGTGTCGCAGT
ACAACGACGCGACCAAGCTGACCGACTGGCGCACGTCGGGCAAGGCACGCTCGCGCGGGATCGAGCTCGACGTGTCAGGC
AAGATCGGCGAGCGCGTGAACGTGATCGCGAGCTATGCGTACATCGACGCGAAGACCACCGAGGATCCGCTGTACGCGGG
CAACCAGCTGTGGAACGTCGCGCGTCACACCGCGTCGCTCGCGGCCGTCTACGACTTCGGCACGGTGGTCGGCGGCGACG
ACCTGCGCATCGGGGCAGACGTGCGCTACGTCGGCGCACGGCCGGGCGATTCGGCGAACAGCTTCACGCTGCCGTCGTAC
GTGCTCGCCGATGCGTTCGCCACGTACGACACGCGGATCGGCAAGCAGAAGCTGTCGTTCCAGCTCAACGTGAAGAACCT
CTTCAATCGCACCTACTACCCGTCGAGCGCGAACCGTTACTTCGTCGCGATCGGCGATGCGCGACAGGTGTCGCTGCTCA
CCACGCTGCAGTTCTGA

Upstream 100 bases:

>100_bases
CTACCTGACGCGCTACTGGGCGACGGTCGTACCGGCCCGTTCGTGAGCGTTTCAAAAAAATTTCTCAACGACCTGAGCTG
TTTCTCGATGTTCGCGTGAC

Downstream 100 bases:

>100_bases
CCACGCAATCGCCGCGTGGCCGTCATGGCGGCGCGCGGCCTCGGAGAAGATCCAGATGAACCGGAACATGAAAACCGGCG
CCGTGCGCGCCGTTGCCGCC

Product: TonB-dependent siderophore receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 858; Mature: 857

Protein sequence:

>858_residues
MGSESSTGPSSTDLPIMVSIRLTYRRRPAPARHLPRASRPAAPAAPGRLARRLAGAVLVSALLPLPALADTDTDAAPAAQ
RAPRRAFDIPAGPLEAALNRFGRDAGILLAFPAELTAGLTSGGVQGRFDIDGAFDRLLAGTGLVALRQPAGGYTLKRADG
SLARPAAAGVAAGAELPAINVRTSALRAESYRAPKEAGVLRSDIPLLDTAQAVNIVPAQVLRDQRPRNLDDALGNVSGIT
QGNTLAGTQDTIMKRGFGGNRDGSIMQNGMPLVQGRAFNAAVDSVEVLKGPTSLLYGLMDPGGVVNVVTKQPQLKRYNAI
SLGASTFGHGKNGGSATFDSTGPVGDSRLAYRLIVDQSNEQYWRNFGEYRQTFVAPSLAWYGRDTQVAVSYQYRKFHSPF
DRGTALDPRTNAPLDIPARRRIDEPFNNMDGESHLAQVSVDHQFNADWSAHFGYSYNRETYDANQLRTTGVDPVKGTMTR
SNDATHGSLSTDSYGIGYVNGKLMLGGMQHDVQVGFDTEYRRIYRKDMLRQAVKTPFNYLNPVYGLLPPSSTVSASDSDQ
TDTLHDASAFVQDTIHLTDKWIVSGGLRYITYNQVAGRGRPFVANTDLSGSKWLPRAGVVYKWTDTFSLYGSYSQSLKPS
SSIAPMTGYIIDGATPPEEATAWEVGGKLDLPGGVTGTLALFNIDKKNVLVSQYNDATKLTDWRTSGKARSRGIELDVSG
KIGERVNVIASYAYIDAKTTEDPLYAGNQLWNVARHTASLAAVYDFGTVVGGDDLRIGADVRYVGARPGDSANSFTLPSY
VLADAFATYDTRIGKQKLSFQLNVKNLFNRTYYPSSANRYFVAIGDARQVSLLTTLQF

Sequences:

>Translated_858_residues
MGSESSTGPSSTDLPIMVSIRLTYRRRPAPARHLPRASRPAAPAAPGRLARRLAGAVLVSALLPLPALADTDTDAAPAAQ
RAPRRAFDIPAGPLEAALNRFGRDAGILLAFPAELTAGLTSGGVQGRFDIDGAFDRLLAGTGLVALRQPAGGYTLKRADG
SLARPAAAGVAAGAELPAINVRTSALRAESYRAPKEAGVLRSDIPLLDTAQAVNIVPAQVLRDQRPRNLDDALGNVSGIT
QGNTLAGTQDTIMKRGFGGNRDGSIMQNGMPLVQGRAFNAAVDSVEVLKGPTSLLYGLMDPGGVVNVVTKQPQLKRYNAI
SLGASTFGHGKNGGSATFDSTGPVGDSRLAYRLIVDQSNEQYWRNFGEYRQTFVAPSLAWYGRDTQVAVSYQYRKFHSPF
DRGTALDPRTNAPLDIPARRRIDEPFNNMDGESHLAQVSVDHQFNADWSAHFGYSYNRETYDANQLRTTGVDPVKGTMTR
SNDATHGSLSTDSYGIGYVNGKLMLGGMQHDVQVGFDTEYRRIYRKDMLRQAVKTPFNYLNPVYGLLPPSSTVSASDSDQ
TDTLHDASAFVQDTIHLTDKWIVSGGLRYITYNQVAGRGRPFVANTDLSGSKWLPRAGVVYKWTDTFSLYGSYSQSLKPS
SSIAPMTGYIIDGATPPEEATAWEVGGKLDLPGGVTGTLALFNIDKKNVLVSQYNDATKLTDWRTSGKARSRGIELDVSG
KIGERVNVIASYAYIDAKTTEDPLYAGNQLWNVARHTASLAAVYDFGTVVGGDDLRIGADVRYVGARPGDSANSFTLPSY
VLADAFATYDTRIGKQKLSFQLNVKNLFNRTYYPSSANRYFVAIGDARQVSLLTTLQF
>Mature_857_residues
GSESSTGPSSTDLPIMVSIRLTYRRRPAPARHLPRASRPAAPAAPGRLARRLAGAVLVSALLPLPALADTDTDAAPAAQR
APRRAFDIPAGPLEAALNRFGRDAGILLAFPAELTAGLTSGGVQGRFDIDGAFDRLLAGTGLVALRQPAGGYTLKRADGS
LARPAAAGVAAGAELPAINVRTSALRAESYRAPKEAGVLRSDIPLLDTAQAVNIVPAQVLRDQRPRNLDDALGNVSGITQ
GNTLAGTQDTIMKRGFGGNRDGSIMQNGMPLVQGRAFNAAVDSVEVLKGPTSLLYGLMDPGGVVNVVTKQPQLKRYNAIS
LGASTFGHGKNGGSATFDSTGPVGDSRLAYRLIVDQSNEQYWRNFGEYRQTFVAPSLAWYGRDTQVAVSYQYRKFHSPFD
RGTALDPRTNAPLDIPARRRIDEPFNNMDGESHLAQVSVDHQFNADWSAHFGYSYNRETYDANQLRTTGVDPVKGTMTRS
NDATHGSLSTDSYGIGYVNGKLMLGGMQHDVQVGFDTEYRRIYRKDMLRQAVKTPFNYLNPVYGLLPPSSTVSASDSDQT
DTLHDASAFVQDTIHLTDKWIVSGGLRYITYNQVAGRGRPFVANTDLSGSKWLPRAGVVYKWTDTFSLYGSYSQSLKPSS
SIAPMTGYIIDGATPPEEATAWEVGGKLDLPGGVTGTLALFNIDKKNVLVSQYNDATKLTDWRTSGKARSRGIELDVSGK
IGERVNVIASYAYIDAKTTEDPLYAGNQLWNVARHTASLAAVYDFGTVVGGDDLRIGADVRYVGARPGDSANSFTLPSYV
LADAFATYDTRIGKQKLSFQLNVKNLFNRTYYPSSANRYFVAIGDARQVSLLTTLQF

Specific function: Specific receptor for the siderophores ferric pseudobactin BN8 and ferric pseudobactin BN7, iron chelating molecules that allow the organism to extract iron from the environment, especially under iron-restricted conditions [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1786344, Length=717, Percent_Identity=27.1966527196653, Blast_Score=174, Evalue=2e-44,
Organism=Escherichia coli, GI1790743, Length=847, Percent_Identity=23.4946871310508, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1787024, Length=396, Percent_Identity=26.7676767676768, Blast_Score=76, Evalue=1e-14,
Organism=Escherichia coli, GI1787723, Length=302, Percent_Identity=24.5033112582781, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR011662
- InterPro:   IPR000531
- InterPro:   IPR010917
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 92517; Mature: 92386

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSESSTGPSSTDLPIMVSIRLTYRRRPAPARHLPRASRPAAPAAPGRLARRLAGAVLVS
CCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
ALLPLPALADTDTDAAPAAQRAPRRAFDIPAGPLEAALNRFGRDAGILLAFPAELTAGLT
HHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCCC
SGGVQGRFDIDGAFDRLLAGTGLVALRQPAGGYTLKRADGSLARPAAAGVAAGAELPAIN
CCCCCEEEECCHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEE
VRTSALRAESYRAPKEAGVLRSDIPLLDTAQAVNIVPAQVLRDQRPRNLDDALGNVSGIT
EEHHHHHHHHCCCCHHHCCHHCCCCCCCCHHHHHCCHHHHHHCCCCCCHHHHHCCCCCCC
QGNTLAGTQDTIMKRGFGGNRDGSIMQNGMPLVQGRAFNAAVDSVEVLKGPTSLLYGLMD
CCCCCCCCHHHHHHCCCCCCCCCCHHHCCCCEECCCCHHHHHHHHHHHCCCHHHHHHCCC
PGGVVNVVTKQPQLKRYNAISLGASTFGHGKNGGSATFDSTGPVGDSRLAYRLIVDQSNE
CCCEEEEEECCCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCH
QYWRNFGEYRQTFVAPSLAWYGRDTQVAVSYQYRKFHSPFDRGTALDPRTNAPLDIPARR
HHHHHHHHHHHHHHCCCCEECCCCCEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCHHH
RIDEPFNNMDGESHLAQVSVDHQFNADWSAHFGYSYNRETYDANQLRTTGVDPVKGTMTR
HCCCCCCCCCCCCEEEEEEECCCCCCCCCEECCCCCCCCCCCCCCEEECCCCCCCCCEEC
SNDATHGSLSTDSYGIGYVNGKLMLGGMQHDVQVGFDTEYRRIYRKDMLRQAVKTPFNYL
CCCCCCCCCCCCCCEEEEEECEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHCCHHHH
NPVYGLLPPSSTVSASDSDQTDTLHDASAFVQDTIHLTDKWIVSGGLRYITYNQVAGRGR
CCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEEEEECCCCCCC
PFVANTDLSGSKWLPRAGVVYKWTDTFSLYGSYSQSLKPSSSIAPMTGYIIDGATPPEEA
CEEEECCCCCCCCCCCCCEEEEECCCEEECCCHHHCCCCCCCCCCCEEEEECCCCCCCCC
TAWEVGGKLDLPGGVTGTLALFNIDKKNVLVSQYNDATKLTDWRTSGKARSRGIELDVSG
CEEECCCEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHCCEEEEECC
KIGERVNVIASYAYIDAKTTEDPLYAGNQLWNVARHTASLAAVYDFGTVVGGDDLRIGAD
CCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHEEECCCEEECCCCEEECCC
VRYVGARPGDSANSFTLPSYVLADAFATYDTRIGKQKLSFQLNVKNLFNRTYYPSSANRY
EEEECCCCCCCCCCEECCHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHCCCCCCCCCCEE
FVAIGDARQVSLLTTLQF
EEEECCCCEEEEEEEECC
>Mature Secondary Structure 
GSESSTGPSSTDLPIMVSIRLTYRRRPAPARHLPRASRPAAPAAPGRLARRLAGAVLVS
CCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
ALLPLPALADTDTDAAPAAQRAPRRAFDIPAGPLEAALNRFGRDAGILLAFPAELTAGLT
HHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHCCCC
SGGVQGRFDIDGAFDRLLAGTGLVALRQPAGGYTLKRADGSLARPAAAGVAAGAELPAIN
CCCCCEEEECCHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEE
VRTSALRAESYRAPKEAGVLRSDIPLLDTAQAVNIVPAQVLRDQRPRNLDDALGNVSGIT
EEHHHHHHHHCCCCHHHCCHHCCCCCCCCHHHHHCCHHHHHHCCCCCCHHHHHCCCCCCC
QGNTLAGTQDTIMKRGFGGNRDGSIMQNGMPLVQGRAFNAAVDSVEVLKGPTSLLYGLMD
CCCCCCCCHHHHHHCCCCCCCCCCHHHCCCCEECCCCHHHHHHHHHHHCCCHHHHHHCCC
PGGVVNVVTKQPQLKRYNAISLGASTFGHGKNGGSATFDSTGPVGDSRLAYRLIVDQSNE
CCCEEEEEECCCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCH
QYWRNFGEYRQTFVAPSLAWYGRDTQVAVSYQYRKFHSPFDRGTALDPRTNAPLDIPARR
HHHHHHHHHHHHHHCCCCEECCCCCEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCHHH
RIDEPFNNMDGESHLAQVSVDHQFNADWSAHFGYSYNRETYDANQLRTTGVDPVKGTMTR
HCCCCCCCCCCCCEEEEEEECCCCCCCCCEECCCCCCCCCCCCCCEEECCCCCCCCCEEC
SNDATHGSLSTDSYGIGYVNGKLMLGGMQHDVQVGFDTEYRRIYRKDMLRQAVKTPFNYL
CCCCCCCCCCCCCCEEEEEECEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHCCHHHH
NPVYGLLPPSSTVSASDSDQTDTLHDASAFVQDTIHLTDKWIVSGGLRYITYNQVAGRGR
CCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEEEEECCCCCCC
PFVANTDLSGSKWLPRAGVVYKWTDTFSLYGSYSQSLKPSSSIAPMTGYIIDGATPPEEA
CEEEECCCCCCCCCCCCCEEEEECCCEEECCCHHHCCCCCCCCCCCEEEEECCCCCCCCC
TAWEVGGKLDLPGGVTGTLALFNIDKKNVLVSQYNDATKLTDWRTSGKARSRGIELDVSG
CEEECCCEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHCCEEEEECC
KIGERVNVIASYAYIDAKTTEDPLYAGNQLWNVARHTASLAAVYDFGTVVGGDDLRIGAD
CCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHEEECCCEEECCCCEEECCC
VRYVGARPGDSANSFTLPSYVLADAFATYDTRIGKQKLSFQLNVKNLFNRTYYPSSANRY
EEEECCCCCCCCCCEECCHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHCCCCCCCCCCEE
FVAIGDARQVSLLTTLQF
EEEECCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8392140 [H]