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The map label for this gene is ygiD [H]

Identifier: 78065069

GI number: 78065069

Start: 466686

End: 467477

Strand: Reverse

Name: ygiD [H]

Synonym: Bcep18194_A3593

Alternate gene names: 78065069

Gene position: 467477-466686 (Counterclockwise)

Preceding gene: 78065070

Following gene: 78065067

Centisome position: 12.65

GC content: 71.09

Gene sequence:

>792_bases
ATGAACCGCTTGCCTTCGCTCTACCTGTCCCACGGCGCCCCGACGCTGCCGATCGACCCGACGCTGCCGTCCGGCGCGTT
CACCCACCTCGCCGCCGAACTGCCGCGCCCACGCGCGGTACTGATGCTGTCCGCGCACTGGGGCACGCAGCGCCCCGTCG
CCAGCATCGCCGCGCATCCGGAAACGATCCACGATTTCTACGGCTTTCCGCAGGCGCTGTACGACATCCGCTACCCGGCA
CCCGGCGCGCCCGACGTCGCCGAGCGCGCGGCCGGGCTGCTGAATGCGGCCGGCATCGAGACCGCGACGACCGAGCACGG
CCTCGACCACGGCGCGTGGGTGCCGATGTTGCTGATGTTCCCGGAAGCCGATGTGCCGGTGGCGCAGTTGTCGATCCAGC
CGCGCGCGGATGCCGCCCACCACTTCGCGCTCGGCCGCGCGCTGCGACCGCTGCGCGACGAAGGCGTGATGGTGATCGGC
TCGGGCCAGATCACGCACAACCTGCGCGCCGCCGATTTCGGTGCGGCACCGGAGGATGCGGACCCGCGCGTCACGGAATT
CACCGACTGGTTCGAGGCGAAGCTGGCCGCGCGCGACGTCGACGCGCTGCTCGACTACCGCCGGCAGGCGCCGCACGCGG
CGCTGATGCATCCGACCGACGAGCATCTGCTGCCGGTATTCACGGCGCTCGGCGCGGCGGACGACGACTACCAGCTCGGC
ATCCAGTCGCTCGGCACGTACCAGCGCGTGCTCGCGATGACGAACTACGTGTTCGCAAGCCCGGCCGCCTGA

Upstream 100 bases:

>100_bases
ATTATCAACAAACAAGCGTCAATCAAATTCCGTAACGCGGATTTATCAATATTCGGTGCGCGCCTATAGTCACAGGCAAA
TCCCTTTGCAGGCCACCACC

Downstream 100 bases:

>100_bases
GCCGCGCACGACAACCGTCGACCGCCAAACAAAAAGCCCGCCCGAGCATTGCTCGGGCGGGCTTTTTTCCGCTGCTTGCT
GCCGCCGCCGAATCCGGCGG

Product: extradiol ring-cleavage dioxygenase III subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MNRLPSLYLSHGAPTLPIDPTLPSGAFTHLAAELPRPRAVLMLSAHWGTQRPVASIAAHPETIHDFYGFPQALYDIRYPA
PGAPDVAERAAGLLNAAGIETATTEHGLDHGAWVPMLLMFPEADVPVAQLSIQPRADAAHHFALGRALRPLRDEGVMVIG
SGQITHNLRAADFGAAPEDADPRVTEFTDWFEAKLAARDVDALLDYRRQAPHAALMHPTDEHLLPVFTALGAADDDYQLG
IQSLGTYQRVLAMTNYVFASPAA

Sequences:

>Translated_263_residues
MNRLPSLYLSHGAPTLPIDPTLPSGAFTHLAAELPRPRAVLMLSAHWGTQRPVASIAAHPETIHDFYGFPQALYDIRYPA
PGAPDVAERAAGLLNAAGIETATTEHGLDHGAWVPMLLMFPEADVPVAQLSIQPRADAAHHFALGRALRPLRDEGVMVIG
SGQITHNLRAADFGAAPEDADPRVTEFTDWFEAKLAARDVDALLDYRRQAPHAALMHPTDEHLLPVFTALGAADDDYQLG
IQSLGTYQRVLAMTNYVFASPAA
>Mature_263_residues
MNRLPSLYLSHGAPTLPIDPTLPSGAFTHLAAELPRPRAVLMLSAHWGTQRPVASIAAHPETIHDFYGFPQALYDIRYPA
PGAPDVAERAAGLLNAAGIETATTEHGLDHGAWVPMLLMFPEADVPVAQLSIQPRADAAHHFALGRALRPLRDEGVMVIG
SGQITHNLRAADFGAAPEDADPRVTEFTDWFEAKLAARDVDALLDYRRQAPHAALMHPTDEHLLPVFTALGAADDDYQLG
IQSLGTYQRVLAMTNYVFASPAA

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=255, Percent_Identity=38.4313725490196, Blast_Score=177, Evalue=7e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28400; Mature: 28400

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLPSLYLSHGAPTLPIDPTLPSGAFTHLAAELPRPRAVLMLSAHWGTQRPVASIAAHP
CCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHCCC
ETIHDFYGFPQALYDIRYPAPGAPDVAERAAGLLNAAGIETATTEHGLDHGAWVPMLLMF
HHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHEEC
PEADVPVAQLSIQPRADAAHHFALGRALRPLRDEGVMVIGSGQITHNLRAADFGAAPEDA
CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCEECCCCCCCCCCCCCCC
DPRVTEFTDWFEAKLAARDVDALLDYRRQAPHAALMHPTDEHLLPVFTALGAADDDYQLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHCCCCCHHHHH
IQSLGTYQRVLAMTNYVFASPAA
HHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNRLPSLYLSHGAPTLPIDPTLPSGAFTHLAAELPRPRAVLMLSAHWGTQRPVASIAAHP
CCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHCCC
ETIHDFYGFPQALYDIRYPAPGAPDVAERAAGLLNAAGIETATTEHGLDHGAWVPMLLMF
HHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHEEC
PEADVPVAQLSIQPRADAAHHFALGRALRPLRDEGVMVIGSGQITHNLRAADFGAAPEDA
CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCEECCCCCCCCCCCCCCC
DPRVTEFTDWFEAKLAARDVDALLDYRRQAPHAALMHPTDEHLLPVFTALGAADDDYQLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHCCCCCHHHHH
IQSLGTYQRVLAMTNYVFASPAA
HHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]