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The map label for this gene is cycA [H]

Identifier: 78064956

GI number: 78064956

Start: 341175

End: 341828

Strand: Direct

Name: cycA [H]

Synonym: Bcep18194_A3479

Alternate gene names: 78064956

Gene position: 341175-341828 (Clockwise)

Preceding gene: 78064953

Following gene: 78064957

Centisome position: 9.24

GC content: 64.22

Gene sequence:

>654_bases
ATGAATCGACTGTGCAAGTCTCTGATGGTGCTTCAGGTTGCAGCAGGGTTCGTAGGTTTCGTAGCGGAGGCAAACGCGGC
GGATGCGGCAAAGCCGGATCTCGACCGTGGCAAGGCAATTGCCGGGCAGGTTTGTGCGTCGTGTCACGGCGCCGACGGCA
ATAGCGCGTCGGGCAGTTTTCCGAAGCTTGCCGGCCAGCATCCCGAATATCTGGTCAAGCAGTTGAACGACTTCAAGACG
CAGCCGGGCGCGAAGGGGCCGGTGCGTACCAACGCGGTGATGGTCGGATTCGCGAGCGCGTTGAGCGCGGACGACATGCG
CAACGTCGCCGCGTACTACGGGTCGCAGACGACGAAGCTCGGCACCGCGCGCGATGCGGCAACCGTGCCGATCGGCCAGA
AGATCTATCGCGGCGGCATCGCGGAGAAGGGCGTACCCGCCTGCGCGAGTTGCCACGGGCCGACAGGGCAAGGGATCCCG
GTCCAGTACCCGCGTCTGTCGGGGCAATGGGCCGATTACACGGTCGCGCAGTTGACCGCGTTCCAGCAGGGTGCCGGTGC
GCGTAACAACAACGAGGCGATGCATCAGATCGCGACGCGGCTGTCGGACAACGAGATCAAGGCCGTCGCGGATTACATTG
CGGGCCTGCGTTGA

Upstream 100 bases:

>100_bases
GGGCGCCTGCCTCGCGCTTTTATGTAGCTTCTGCGGTAGACTGAACGCCGTCGTTTTTTGCAGAACCTCAAATTCCCACA
AGACGAAACAGGGTGTGCGA

Downstream 100 bases:

>100_bases
GCGGTCAGCCGCGAATGGAATGACCGGGCGCCCGAAGGGCGGCCGGAGTCAGAACAAGAAAAGGGTGGGGCGCCGCATGG
TTGCGGTCGCCTTGCCCTTT

Product: cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MNRLCKSLMVLQVAAGFVGFVAEANAADAAKPDLDRGKAIAGQVCASCHGADGNSASGSFPKLAGQHPEYLVKQLNDFKT
QPGAKGPVRTNAVMVGFASALSADDMRNVAAYYGSQTTKLGTARDAATVPIGQKIYRGGIAEKGVPACASCHGPTGQGIP
VQYPRLSGQWADYTVAQLTAFQQGAGARNNNEAMHQIATRLSDNEIKAVADYIAGLR

Sequences:

>Translated_217_residues
MNRLCKSLMVLQVAAGFVGFVAEANAADAAKPDLDRGKAIAGQVCASCHGADGNSASGSFPKLAGQHPEYLVKQLNDFKT
QPGAKGPVRTNAVMVGFASALSADDMRNVAAYYGSQTTKLGTARDAATVPIGQKIYRGGIAEKGVPACASCHGPTGQGIP
VQYPRLSGQWADYTVAQLTAFQQGAGARNNNEAMHQIATRLSDNEIKAVADYIAGLR
>Mature_217_residues
MNRLCKSLMVLQVAAGFVGFVAEANAADAAKPDLDRGKAIAGQVCASCHGADGNSASGSFPKLAGQHPEYLVKQLNDFKT
QPGAKGPVRTNAVMVGFASALSADDMRNVAAYYGSQTTKLGTARDAATVPIGQKIYRGGIAEKGVPACASCHGPTGQGIP
VQYPRLSGQWADYTVAQLTAFQQGAGARNNNEAMHQIATRLSDNEIKAVADYIAGLR

Specific function: Diheme, high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 22571; Mature: 22571

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLCKSLMVLQVAAGFVGFVAEANAADAAKPDLDRGKAIAGQVCASCHGADGNSASGSF
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
PKLAGQHPEYLVKQLNDFKTQPGAKGPVRTNAVMVGFASALSADDMRNVAAYYGSQTTKL
CHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHEEHHHHHHCHHHHHHHHHHHCCCCCCC
GTARDAATVPIGQKIYRGGIAEKGVPACASCHGPTGQGIPVQYPRLSGQWADYTVAQLTA
CCCCCCCCCCCHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
FQQGAGARNNNEAMHQIATRLSDNEIKAVADYIAGLR
HHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNRLCKSLMVLQVAAGFVGFVAEANAADAAKPDLDRGKAIAGQVCASCHGADGNSASGSF
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
PKLAGQHPEYLVKQLNDFKTQPGAKGPVRTNAVMVGFASALSADDMRNVAAYYGSQTTKL
CHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHEEHHHHHHCHHHHHHHHHHHCCCCCCC
GTARDAATVPIGQKIYRGGIAEKGVPACASCHGPTGQGIPVQYPRLSGQWADYTVAQLTA
CCCCCCCCCCCHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
FQQGAGARNNNEAMHQIATRLSDNEIKAVADYIAGLR
HHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7619830; 6089759 [H]