Click here to switch to the map view.

The map label for this gene is ybcL [H]

Identifier: 78064892

GI number: 78064892

Start: 274469

End: 275062

Strand: Reverse

Name: ybcL [H]

Synonym: Bcep18194_A3415

Alternate gene names: 78064892

Gene position: 275062-274469 (Counterclockwise)

Preceding gene: 78064893

Following gene: 78064891

Centisome position: 7.45

GC content: 72.39

Gene sequence:

>594_bases
ATGCGTGTGGATCGCCGGATCACTCCGCCTGCGCCATCGGGTCGCCCGTCGCCGTTCCTCGCCGCCCTCCTTTACGCCGC
CGCCCTCACTGCCCTGCCCGCACATGCGGAGGGCCCGTTCACCGTGACGAGCGACGACCTGACACCGGGCGGGCGCGTCC
GCGCCGCGAACGTGTTCGACCGCGGCGACTGCAAGGGCGGCAACCACTCGCCGCAGCTCACCTGGCACAACCCGCCGCCC
GGCACGCACGGCTACGCGGTCACGATCTTCGATCCCGATGCGCCGGGGCACGGCTGGTGGCACTGGGCCGTGGCGGGCAT
TCCGGCGACGGTCACGAGCCTGCCCGCCGACGCGAGTGCGTCCGGGTTCCTGCGGCGCATCGGCGCGAGCGAGGCGCGCA
ACGACTTCGGGATCGACGGCTACGGCGGCCCGTGCCCGCCGCCCGGCAAACCGCACCGCTACGTGATCACCGTCTATGCG
CTGAAGGGCGACGACCTGCGCGTCGCGCAGGGCCGCCCCGCGCCGATGTTCGAGCACGAGATCGGCACGCTGGCGATCGG
TACCGCGCAACTCACGGTCAACTACGGGCAATAG

Upstream 100 bases:

>100_bases
GCTAGACTTGATCCATCGCTGCCATCAGCTGCGCAGGCAACGCACCACGCCAACAACGCCGGACGCATCGGTCCGGCCCA
CGTGACGGGAGAAGCGCCAT

Downstream 100 bases:

>100_bases
CGCGTCGTAACAGGCGCCAGGCGCCGAGCATCGTGCGCCGCCACGGCGCCGCACCGCGATTGCCTGCCGCCGCGACATTC
CGTACCCCGCACCCGCGCGT

Product: PBP family phospholipid-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MRVDRRITPPAPSGRPSPFLAALLYAAALTALPAHAEGPFTVTSDDLTPGGRVRAANVFDRGDCKGGNHSPQLTWHNPPP
GTHGYAVTIFDPDAPGHGWWHWAVAGIPATVTSLPADASASGFLRRIGASEARNDFGIDGYGGPCPPPGKPHRYVITVYA
LKGDDLRVAQGRPAPMFEHEIGTLAIGTAQLTVNYGQ

Sequences:

>Translated_197_residues
MRVDRRITPPAPSGRPSPFLAALLYAAALTALPAHAEGPFTVTSDDLTPGGRVRAANVFDRGDCKGGNHSPQLTWHNPPP
GTHGYAVTIFDPDAPGHGWWHWAVAGIPATVTSLPADASASGFLRRIGASEARNDFGIDGYGGPCPPPGKPHRYVITVYA
LKGDDLRVAQGRPAPMFEHEIGTLAIGTAQLTVNYGQ
>Mature_197_residues
MRVDRRITPPAPSGRPSPFLAALLYAAALTALPAHAEGPFTVTSDDLTPGGRVRAANVFDRGDCKGGNHSPQLTWHNPPP
GTHGYAVTIFDPDAPGHGWWHWAVAGIPATVTSLPADASASGFLRRIGASEARNDFGIDGYGGPCPPPGKPHRYVITVYA
LKGDDLRVAQGRPAPMFEHEIGTLAIGTAQLTVNYGQ

Specific function: Unknown

COG id: COG1881

COG function: function code R; Phospholipid-binding protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0098 family [H]

Homologues:

Organism=Escherichia coli, GI1786757, Length=177, Percent_Identity=42.3728813559322, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1786990, Length=157, Percent_Identity=35.6687898089172, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008914
- InterPro:   IPR005247 [H]

Pfam domain/function: PF01161 PBP [H]

EC number: NA

Molecular weight: Translated: 20763; Mature: 20763

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVDRRITPPAPSGRPSPFLAALLYAAALTALPAHAEGPFTVTSDDLTPGGRVRAANVFD
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEECCCC
RGDCKGGNHSPQLTWHNPPPGTHGYAVTIFDPDAPGHGWWHWAVAGIPATVTSLPADASA
CCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEECCCCCCCH
SGFLRRIGASEARNDFGIDGYGGPCPPPGKPHRYVITVYALKGDDLRVAQGRPAPMFEHE
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCCC
IGTLAIGTAQLTVNYGQ
CCEEEEEEEEEEEEECC
>Mature Secondary Structure
MRVDRRITPPAPSGRPSPFLAALLYAAALTALPAHAEGPFTVTSDDLTPGGRVRAANVFD
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEECCCC
RGDCKGGNHSPQLTWHNPPPGTHGYAVTIFDPDAPGHGWWHWAVAGIPATVTSLPADASA
CCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEECCCCCCCH
SGFLRRIGASEARNDFGIDGYGGPCPPPGKPHRYVITVYALKGDDLRVAQGRPAPMFEHE
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCCC
IGTLAIGTAQLTVNYGQ
CCEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 11439028 [H]