Click here to switch to the map view.

The map label for this gene is gspD [H]

Identifier: 78064721

GI number: 78064721

Start: 74771

End: 77116

Strand: Reverse

Name: gspD [H]

Synonym: Bcep18194_A3244

Alternate gene names: 78064721

Gene position: 77116-74771 (Counterclockwise)

Preceding gene: 78064724

Following gene: 78064720

Centisome position: 2.09

GC content: 66.45

Gene sequence:

>2346_bases
ATGACAAGAAATCGCTTCGTTATGCGGCGTGTCGCCACGACTCTGATCGTCGCCGGCATCATCGTCTCGCAGGCCGCCTA
CGCTCAGGTCACGCTCAACTTCGTGAATGCGGATATCGACCAGGTCGCCAAGGCGATCGGCGCCGCAACCGGCAAGACCA
TCATCGTCGACCCTCGCGTGAAGGGGCAGCTCAACCTCGTGGCCGAACGGCCGGTGCCGGAAGACCAGGCACTGAAGACG
CTGCAGTCGGCACTGCGCATGCAGGGCTTCGCACTCGTGCAGGATCACGGCGTGCTGAAGGTCGTGCCCGAGGCCGACGC
GAAACTGCAGGGCGTGCCGACTTACGTCGGCAATGCACCGCAGGCGCGCGGCGATCAGGTGATCACGCAGGTGTTCGAGC
TGCACAACGAATCGGCGAACAACCTGCTGCCCGTGCTGCGGCCGCTGATCTCGCCGAACAACACGGTCACCGCCTACCCG
GCGAACAACACGATCGTCGTGACCGACTACGCGGACAACGTGCGGCGCATCGCGCAGATCATCGCGGGCGTGGACAGCGC
CGCGGGCGCGCAGGTGCAGGTCGTTCCGCTGCGCAACGCGAACGCGATCGATCTCGCCGCGCAGCTGCAGAAAATGCTCG
ACCCGGGCGCGATCGGCAACAGCGACGCGACGCTGAAGGTGTCGGTCACGGCCGACCCGCGGACCAACTCACTGATGCTG
CGCGCGTCGAACGCGTCGCGCCTGGCGGCTGCGAAGCGCCTCGTGCAACAGCTCGACGCGCCGAGCGCGGTGCCCGGCAA
CATGCACGTCGTGCCGCTGCGCAACGCCGATGCGGTGAAGCTCGCGAAGACGCTGCGCGGGATGCTCGGCAAGGGCAGCG
GCAGCGATAGCGGCTCGTCGGCGTCGTCCAACGATGCGAACAGCTTCAACCAGAGCGGCGGCTCGTCGTCGAGCGGCAAC
TTCTCGACCGGTACGTCCGGCACTCCGCCGCTGCCGTCGGGCGGCCTCGGCGGTTCGTCATCCTCGTCGTCGTACGGCGG
CTCGTCCAGCGGTGGCGGGCTCGGCAGCGGCGGCCTGCTCGGCGGCGACAAGGACAAGAGCGGTGACGACAACCAGCAGG
GCGGGATGATCCAGGCCGATGCGGCGACCAACTCGCTGATCATCACGGCGTCCGATCCGGTCTACCGGAACCTGCGCTCG
GTGATCGACCAGCTCGACGCGCGGCGTGCGCAGGTCTATATCGAAGCGCTGATCGTCGAACTGGCCTCGAACACGCAGGG
CAACCTCGGCATCCAGTGGCAGGTGGCGAGCGGCCAGTTCCTCGGCGGCACGAACCTGAACCCTACGGCCGGCCTGGGCA
ACAGCATCATCAACCTGACGGCGGGCGGTGTGACCAACGCTGCCGGCGGCATCACCGGAGGCGGTCTGGCCGCCAACCTC
GGGTCGCTGACCCAAGGGCTCAACATCGGCTGGCTGCACAACATGTTCGGCGTGCAGGGTCTCGGTGCGCTGCTGCAGTA
TTTCGCGGGCGTGAGCGACGCGAACGTGCTGTCGACGCCGAACCTGGTCACGCTCGACAACGAGGAAGCGAAGATCGTCG
TCGGCCAGAACGTGCCGATCGCGACCGGCTCGTATTCGAACCTGACGAGCGGCAATACAAACAATGCGTTCAATACCTAT
GACCGTCGCGACGTCGGCCTGACGCTGCACGTGAAGCCGCAGATCACCGAAGGCGGGATCCTGAAGCTGCAGCTCTACAC
CGAGGATTCGGCTGTCGTCGCGGGCACCACGAGCGCGCAGACTGGCCCGACCTTCACGAAGCGCTCGATCCAGTCGACGA
TTCTCGCGGACAACGGCGAGATCATCGTGCTCGGCGGCTTGATGCAGGACAACTACCAGGTGTCGAACAGCAAGGTGCCG
CTGCTCGGCGACATCCCGTGGATCGGCCAGCTGTTCCGTTCCGAATCGAAGATCCGCGCGAAAACTAACCTGATGGTGTT
CCTGCGCCCGGTGATCATCTCCGATCGCAGCACCGCACAGGAAGTCACGTCGAACCGCTACGACTACATCCAGGGCGTGA
CGGGCGCGTACAAGTCGGACAACAACGTGATCCGCGACAAGGACGATCCGGTCGTCCCGCCGATGCCGCTGGGCCCGAGC
CAGGGCGGCACGCCGGCCGGCAACCTGTTTGATCTCGACAAGATGCGTCGCCAGCAACTGCAGCGCCAGGTCGTGCCGGT
GCCGGCCCAGCCGTTGCCGGAGGCAACGCCCGCGCAGCCGCAGAGCGTGCCGCAGCAGGCGGTGCCGCAACAGCCGCTGA
CGGCCACGCCGGGAGCGTCGCAGTGA

Upstream 100 bases:

>100_bases
GATATTTCGGACATGAAAAACTGCTAATGTCGCCTCTTTCGGACTTGGATCCCAGCACTACCGCCGGAAGTGGCCTGAGC
CGGCATCGACCCATTCATCC

Downstream 100 bases:

>100_bases
GCGACGTGCTCGCGTCTCCCTCCCACGACGGCGCGCCGGGCGAACGGCAGCCGCCGTCGCCGCTCGCCGCGCGATTGTTG
CCGTACGGCTTCGCGAAGAG

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 781; Mature: 780

Protein sequence:

>781_residues
MTRNRFVMRRVATTLIVAGIIVSQAAYAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERPVPEDQALKT
LQSALRMQGFALVQDHGVLKVVPEADAKLQGVPTYVGNAPQARGDQVITQVFELHNESANNLLPVLRPLISPNNTVTAYP
ANNTIVVTDYADNVRRIAQIIAGVDSAAGAQVQVVPLRNANAIDLAAQLQKMLDPGAIGNSDATLKVSVTADPRTNSLML
RASNASRLAAAKRLVQQLDAPSAVPGNMHVVPLRNADAVKLAKTLRGMLGKGSGSDSGSSASSNDANSFNQSGGSSSSGN
FSTGTSGTPPLPSGGLGGSSSSSSYGGSSSGGGLGSGGLLGGDKDKSGDDNQQGGMIQADAATNSLIITASDPVYRNLRS
VIDQLDARRAQVYIEALIVELASNTQGNLGIQWQVASGQFLGGTNLNPTAGLGNSIINLTAGGVTNAAGGITGGGLAANL
GSLTQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIATGSYSNLTSGNTNNAFNTY
DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVAGTTSAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVP
LLGDIPWIGQLFRSESKIRAKTNLMVFLRPVIISDRSTAQEVTSNRYDYIQGVTGAYKSDNNVIRDKDDPVVPPMPLGPS
QGGTPAGNLFDLDKMRRQQLQRQVVPVPAQPLPEATPAQPQSVPQQAVPQQPLTATPGASQ

Sequences:

>Translated_781_residues
MTRNRFVMRRVATTLIVAGIIVSQAAYAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERPVPEDQALKT
LQSALRMQGFALVQDHGVLKVVPEADAKLQGVPTYVGNAPQARGDQVITQVFELHNESANNLLPVLRPLISPNNTVTAYP
ANNTIVVTDYADNVRRIAQIIAGVDSAAGAQVQVVPLRNANAIDLAAQLQKMLDPGAIGNSDATLKVSVTADPRTNSLML
RASNASRLAAAKRLVQQLDAPSAVPGNMHVVPLRNADAVKLAKTLRGMLGKGSGSDSGSSASSNDANSFNQSGGSSSSGN
FSTGTSGTPPLPSGGLGGSSSSSSYGGSSSGGGLGSGGLLGGDKDKSGDDNQQGGMIQADAATNSLIITASDPVYRNLRS
VIDQLDARRAQVYIEALIVELASNTQGNLGIQWQVASGQFLGGTNLNPTAGLGNSIINLTAGGVTNAAGGITGGGLAANL
GSLTQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIATGSYSNLTSGNTNNAFNTY
DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVAGTTSAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVP
LLGDIPWIGQLFRSESKIRAKTNLMVFLRPVIISDRSTAQEVTSNRYDYIQGVTGAYKSDNNVIRDKDDPVVPPMPLGPS
QGGTPAGNLFDLDKMRRQQLQRQVVPVPAQPLPEATPAQPQSVPQQAVPQQPLTATPGASQ
>Mature_780_residues
TRNRFVMRRVATTLIVAGIIVSQAAYAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERPVPEDQALKTL
QSALRMQGFALVQDHGVLKVVPEADAKLQGVPTYVGNAPQARGDQVITQVFELHNESANNLLPVLRPLISPNNTVTAYPA
NNTIVVTDYADNVRRIAQIIAGVDSAAGAQVQVVPLRNANAIDLAAQLQKMLDPGAIGNSDATLKVSVTADPRTNSLMLR
ASNASRLAAAKRLVQQLDAPSAVPGNMHVVPLRNADAVKLAKTLRGMLGKGSGSDSGSSASSNDANSFNQSGGSSSSGNF
STGTSGTPPLPSGGLGGSSSSSSYGGSSSGGGLGSGGLLGGDKDKSGDDNQQGGMIQADAATNSLIITASDPVYRNLRSV
IDQLDARRAQVYIEALIVELASNTQGNLGIQWQVASGQFLGGTNLNPTAGLGNSIINLTAGGVTNAAGGITGGGLAANLG
SLTQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIATGSYSNLTSGNTNNAFNTYD
RRDVGLTLHVKPQITEGGILKLQLYTEDSAVVAGTTSAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPL
LGDIPWIGQLFRSESKIRAKTNLMVFLRPVIISDRSTAQEVTSNRYDYIQGVTGAYKSDNNVIRDKDDPVVPPMPLGPSQ
GGTPAGNLFDLDKMRRQQLQRQVVPVPAQPLPEATPAQPQSVPQQAVPQQPLTATPGASQ

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=517, Percent_Identity=34.6228239845261, Blast_Score=221, Evalue=2e-58,
Organism=Escherichia coli, GI1789793, Length=303, Percent_Identity=27.0627062706271, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 81237; Mature: 81106

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRNRFVMRRVATTLIVAGIIVSQAAYAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRV
CCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHCCCCCEEEECCCC
KGQLNLVAERPVPEDQALKTLQSALRMQGFALVQDHGVLKVVPEADAKLQGVPTYVGNAP
CCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCCCCCCCHHCCCCC
QARGDQVITQVFELHNESANNLLPVLRPLISPNNTVTAYPANNTIVVTDYADNVRRIAQI
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHHHHHHHH
IAGVDSAAGAQVQVVPLRNANAIDLAAQLQKMLDPGAIGNSDATLKVSVTADPRTNSLML
HHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEE
RASNASRLAAAKRLVQQLDAPSAVPGNMHVVPLRNADAVKLAKTLRGMLGKGSGSDSGSS
EECCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCC
ASSNDANSFNQSGGSSSSGNFSTGTSGTPPLPSGGLGGSSSSSSYGGSSSGGGLGSGGLL
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGDKDKSGDDNQQGGMIQADAATNSLIITASDPVYRNLRSVIDQLDARRAQVYIEALIVE
CCCCCCCCCCCCCCCEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LASNTQGNLGIQWQVASGQFLGGTNLNPTAGLGNSIINLTAGGVTNAAGGITGGGLAANL
HHCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHH
GSLTQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLVTLDNEEAKIVVGQNVPI
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEECCCCEEEEECCCCCE
ATGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVAGTTSAQ
ECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCC
TGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKIRA
CCCCHHHHHHHHHEEECCCCEEEEECEECCCEEECCCCCCEEECCHHHHHHHCCCCHHHH
KTNLMVFLRPVIISDRSTAQEVTSNRYDYIQGVTGAYKSDNNVIRDKDDPVVPPMPLGPS
HCCEEEEEEEEEECCCHHHHHHHCCCHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC
QGGTPAGNLFDLDKMRRQQLQRQVVPVPAQPLPEATPAQPQSVPQQAVPQQPLTATPGAS
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
Q
C
>Mature Secondary Structure 
TRNRFVMRRVATTLIVAGIIVSQAAYAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRV
CCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHCCCCCEEEECCCC
KGQLNLVAERPVPEDQALKTLQSALRMQGFALVQDHGVLKVVPEADAKLQGVPTYVGNAP
CCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCCCCCCCHHCCCCC
QARGDQVITQVFELHNESANNLLPVLRPLISPNNTVTAYPANNTIVVTDYADNVRRIAQI
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHHHHHHHH
IAGVDSAAGAQVQVVPLRNANAIDLAAQLQKMLDPGAIGNSDATLKVSVTADPRTNSLML
HHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEE
RASNASRLAAAKRLVQQLDAPSAVPGNMHVVPLRNADAVKLAKTLRGMLGKGSGSDSGSS
EECCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCC
ASSNDANSFNQSGGSSSSGNFSTGTSGTPPLPSGGLGGSSSSSSYGGSSSGGGLGSGGLL
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGDKDKSGDDNQQGGMIQADAATNSLIITASDPVYRNLRSVIDQLDARRAQVYIEALIVE
CCCCCCCCCCCCCCCEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LASNTQGNLGIQWQVASGQFLGGTNLNPTAGLGNSIINLTAGGVTNAAGGITGGGLAANL
HHCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHH
GSLTQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLVTLDNEEAKIVVGQNVPI
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEECCCCEEEEECCCCCE
ATGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVAGTTSAQ
ECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCC
TGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKIRA
CCCCHHHHHHHHHEEECCCCEEEEECEECCCEEECCCCCCEEECCHHHHHHHCCCCHHHH
KTNLMVFLRPVIISDRSTAQEVTSNRYDYIQGVTGAYKSDNNVIRDKDDPVVPPMPLGPS
HCCEEEEEEEEEECCCHHHHHHHCCCHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC
QGGTPAGNLFDLDKMRRQQLQRQVVPVPAQPLPEATPAQPQSVPQQAVPQQPLTATPGAS
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]