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The map label for this gene is dapF

Identifier: 161702953

GI number: 161702953

Start: 3601309

End: 3602178

Strand: Direct

Name: dapF

Synonym: Bcep18194_A6435

Alternate gene names: 161702953

Gene position: 3601309-3602178 (Clockwise)

Preceding gene: 78067901

Following gene: 78067905

Centisome position: 97.49

GC content: 69.08

Gene sequence:

>870_bases
GTGAAACTCTCGTTCACCAAGATGCACGGCGCGGGCAACGACTTCGTCGTGCTCGACGGCTATTCGCGCGCGTTGCCGCC
GCTCACCGAAGCGCAGGTGCGTGCGCTCGCCAATCGTCACTTCGGCATCGGCGCCGACCAGCTGCTGCTCGTCGAAAAAC
CGACCGTCGACGGCGTGGATTTCAAGTACCGGATCTTCAATTGCGACGGCGGCGAGGTCGAACACTGCGGCAACGGCGCA
CGCTGCTTCGTGAAATTCGTCAGCGACCGCGGCCTGACCGACAAGCGCAGCGTGCGCGTGCAGGTGATGAAGGGCCTGAT
CACGCTGACGATGCAGGACAACGGCGAAGTCGTCGTCGACATGGGTGCGCCCGTGTTCACGCCGGCGCAGGTGCCGTTCG
ACGCAGCGGGCCTCGACGGCCGCACCGAGGGCCACGACACGCTGTGGCCGCTCGACGTCGGCGGCGCGACGCGCTGGATC
TCGACGGTGACGATGGGCAACCCGCACGCGGTGCAGGTCGTCGACGACGCCGAGGCCTATCCGGTGCTCGAAGAAGGCCC
GCTGATCGAGCACCATGCGCGCTTTCCGGAGCGCGTGAACGCCGGCTTCATGCAGGTCGTGTCGCGCAGCGAAGTGAAGC
TGCGCGTGTACGAACGCGCGGCGGGCGAGACGCTCGCGTGCGGCACCGGCGCGTGCGCGGCGGTCGCGGCCGGCATCCGG
CGCGGCCTGCTCGATTCGCCCGTGACCGTGCACACGCACGGCGGCACGCTGACGATCAGCTGGGACGGCGCGCGCGACGA
AGCCGCCGCGCTGATGATGGCCGGGCCCGCCACGACCGTGTTCGAAGGCGAGATCGACCTGCCCGCCTGA

Upstream 100 bases:

>100_bases
TTTGCGGTTGAGATCAGCACGACGAACGAGGCCGCCCGGCATGGCGCGGCGTCGCGCGCACCGCGCTGACCGCCTTGTTC
GCCATGGAAATCCGGACCCA

Downstream 100 bases:

>100_bases
CCCCGCAACGTCCTTGATAACTGAACGCTCCAGCCACATGAACGATCGCGAAGTCGCCGACTACCTGCTCGCCAATCCCG
AATTCTTCGCGCAGCACGCC

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGVDFKYRIFNCDGGEVEHCGNGA
RCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMGAPVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWI
STVTMGNPHAVQVVDDAEAYPVLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAGIR
RGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLPA

Sequences:

>Translated_289_residues
MKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGVDFKYRIFNCDGGEVEHCGNGA
RCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMGAPVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWI
STVTMGNPHAVQVVDDAEAYPVLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAGIR
RGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLPA
>Mature_289_residues
MKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGVDFKYRIFNCDGGEVEHCGNGA
RCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMGAPVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWI
STVTMGNPHAVQVVDDAEAYPVLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAGIR
RGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLPA

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=285, Percent_Identity=48.7719298245614, Blast_Score=264, Evalue=6e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 30901; Mature: 30901

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGVD
CCEEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
FKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVD
EEEEEEECCCCCHHHCCCCCEEEEEEECCCCCCCHHHHHHEEEECEEEEEEECCCCEEEE
MGAPVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWISTVTMGNPHAVQVVDDAEAY
CCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCC
PVLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAGIR
CCCCCCCCHHHHHCCCHHHCHHHHHHHCCCCEEEEEEECCCCCEEECCCCHHHHHHHHHH
RGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLPA
HCCCCCCEEEEECCCEEEEEECCCCCCCEEEEEECCCCEEEECCCCCCC
>Mature Secondary Structure
MKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGVD
CCEEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
FKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVD
EEEEEEECCCCCHHHCCCCCEEEEEEECCCCCCCHHHHHHEEEECEEEEEEECCCCEEEE
MGAPVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWISTVTMGNPHAVQVVDDAEAY
CCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCC
PVLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAGIR
CCCCCCCCHHHHHCCCHHHCHHHHHHHCCCCEEEEEEECCCCCEEECCCCHHHHHHHHHH
RGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLPA
HCCCCCCEEEEECCCEEEEEECCCCCCCEEEEEECCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA